Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq406 165 1e-38 seq334 131 3e-28 seq91 102 1e-19 seq1919 100 4e-19 seq1931 91.5 2e-16 seq2654 87.8 3e-15 seq1553 78.8 1e-12 seq1918 75.2 2e-11 >seq406 Length=121039945 Score = 165 bits (182), Expect = 1e-38 Identities = 181/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 26147285 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 26147228 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||| ||||| | ||||||||||||| ||||| | || Sbjct 26147227 CTCGTTCATGGGGAATAAT-GCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 26147169 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 26147168 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 26147109 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 26147108 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 26147056 Score = 87.8 bits (96), Expect = 3e-15 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| |||||| || |||| || | ||| || || | | |||||| ||||| Sbjct 25533646 GTAAAAAGGACAGGGATTTAATCAATGCAATCTT-ATAACCCACACTTACTGAGAATT-- 25533702 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 | || | | || ||||||||| | ||| |||||| || || || |||| || Sbjct 25533703 --CATTCATGGGGAAAAATTGCAATCCCCGATCACCATCATGAATGGGGTTCAAAAGGTT 25533760 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | | ||| | || | |||| | |||||||| || | ||||| Sbjct 25533761 ACCCACATCTGCCACATAGGGT-AGGCACAAGCTGAACAGATCAGTGTGGCACACGTGCA 25533819 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | | |||| |||||||||||||| |||||||| ||||| || | |||| Sbjct 25533820 GCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTCAATCTCGCATGGC 25533872 >seq334 Length=143122389 Score = 131 bits (144), Expect = 3e-28 Identities = 179/241 (74%), Gaps = 23/241 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | || | ||||| ||||| ||| |||||| |||||| | Sbjct 47665378 GTACAAAGGGCAGGGACTTC----ACTCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 47665431 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAA- 115 ||| || | || || ||||||||| | ||||||||||| |||| ||||| Sbjct 47665432 CTCATTCATGAGAAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACC 47665487 Query 116 GATTACCCGGACCTGTCGGCCAAGGTGA-TAG--ACTCGTTGAATACATCAGTGTAGCGC 172 | ||||||| |||| |||| | | ||| || || ||| |||||||||||| Sbjct 47665488 GGTTACCCG----TGTCTGCCACGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGC 47665543 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 || ||| |||| | |||||||||||||||||||||||||||||| ||||| || |||| Sbjct 47665544 GCATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGG 47665602 Query 233 C 233 | Sbjct 47665603 C 47665603 >seq91 Length=163208435 Score = 102 bits (112), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 |||||| || |||| | ||||| ||||||| | ||||||||||||| ||||| | | | Sbjct 5395459 CAGGGATTTAATCAATGTAAGCTT-ATGACTCACTCTTACTAGGAATT-CCTCGGTCATG 5395402 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCT 129 || ||||||||| | |||||||||| || ||||| || ||||| | ||| Sbjct 5395401 GGAAATAATTGCAATCCCCAATCCCCATCATGAATGGGGTTCAAGAGTTTACCAGCGCCT 5395342 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | |||| ||| | || || ||| | | |||||| || |||| |||| | | Sbjct 5395341 GCCGGCGTAGGGTAGGCACACGCTGAGTCAGTTGGTGTAGTGCATGTGCAGCCCCAGATA 5395282 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||| | ||||||||||||||||||||||| Sbjct 5395281 TCTATGAGCATCACAGACCTGTTATTGCCT 5395252 >seq1919 Length=202788 Score = 100 bits (110), Expect = 4e-19 Identities = 169/237 (71%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| ||||||| || ||||||| | ||| || || | | |||||| ||||| | Sbjct 174610 GTAAAAAGGACAGGGACTTAATCAACGCAATCTT-ATAACCCACACTTACTGAGAATT-C 174667 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| || | | || ||||| ||| | ||| |||||| || || || |||| || Sbjct 174668 CTCATTCATGGGGAAAAATTGAAATCCCCGATCACCATCATGAATGGGGTTCAAAAGGTT 174727 Query 120 ACCCGGACCTGTCGGCCA---AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| ||| | || | |||| | ||||||| || | ||| Sbjct 174728 ACCC--AC--GTCTGCCACATAGGGTAGGCACAAGCTGAACAGGTCAGTGTGGCACACGT 174783 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| | | |||| |||||||||||||| |||||||| ||||| || ||||| Sbjct 174784 GCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTCAATCTCGGGTGGC 174839 >seq1931 Length=242463 Score = 91.5 bits (100), Expect = 2e-16 Identities = 167/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| ||||||| || ||||| | | ||| || || | | ||||| ||||| | Sbjct 91697 GTAAAAAGGACAGGGACTTAATCAACACAATCTT-ATAACCCACATTTACTGAGAATT-C 91640 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| || | | || ||||| ||| | ||| |||||| || || || |||| || Sbjct 91639 CTCATTCATGGAGAAAAATTGAAATCCACAATCACCATCATGAATGGGGTTCAAAAGCTT 91580 Query 120 ACCCGGACCTGTCGGCCA---AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| || ||| |||| ||| | || | |||| | ||||||| || | ||| Sbjct 91579 ACCC--AC--GTCTGCCACATAGGGTAGGCACAAGCTGAACAGGTCAGTGTGGCACACGT 91524 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| | | |||| |||||||||||||| |||||||| ||||| || ||||| Sbjct 91523 GCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTCAATCTCGGGTGGC 91468 >seq2654 Length=14085 Score = 87.8 bits (96), Expect = 3e-15 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| |||||| || |||| || | ||| || || | | |||||| ||||| Sbjct 12483 GTAAAAAGGACAGGGATTTAATCAATGCAATCTT-ATAACCCACACTTACTGAGAATT-- 12539 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 | || | | || ||||||||| | ||| |||||| || || || |||| || Sbjct 12540 --CATTCATGGGGAAAAATTGCAATCCCCGATCACCATCATGAATGGGGTTCAAAAGGTT 12597 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | | ||| | || | |||| | |||||||| || | ||||| Sbjct 12598 ACCCACATCTGCCACATAGGGT-AGGCACAAGCTGAACAGATCAGTGTGGCACACGTGCA 12656 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | | |||| |||||||||||||| |||||||| ||||| || | |||| Sbjct 12657 GCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTCAATCTCGCATGGC 12709 >seq1553 Length=133034539 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||| ||||||| | ||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 16310218 TCAGCGTAGCGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 16310160 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 16310159 AATCTCAGGTGGC 16310147 >seq1918 Length=540987 Score = 75.2 bits (82), Expect = 2e-11 Identities = 163/237 (69%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| ||||||| || |||| || | || || || | | |||||| ||||| Sbjct 160442 GTAAAAAGGACAGGGACTTAATCAATGCAATTTT-ATAACCCACACTTACTGAGAATT-- 160498 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 | || | | || ||||||||| | ||| |||||| || || || |||| || Sbjct 160499 --CATTCATGGGGAAAAATTGCAATCCCCGATCACCATCATGAATGGGGTTCAAAAGGTT 160556 Query 120 ACCCGGACCTGTCGGCCA---AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | || ||| |||| ||| | || | |||| | ||||||| || | ||| Sbjct 160557 ACTC--AC--GTCTGCCACATAGGGTAGGCACAAGCTGAACAAGTCAGTGTGGCACACGT 160612 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | | |||| |||||||||||||| |||||||| ||||| || | |||| Sbjct 160613 TCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTCAATCTCGCATGGC 160668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751872629060