Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq406 145 1e-32 seq1724 143 5e-32 seq334 118 2e-24 seq493 104 4e-20 >seq406 Length=121039945 Score = 145 bits (160), Expect = 1e-32 Identities = 205/278 (74%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | ||||||| |||||||||||||||| Sbjct 26146362 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT 26146420 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 26146421 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 26146479 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||| ||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 26146480 TTCTA-TTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 26146538 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 26146539 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 26146598 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| ||| |||||||||||| |||||||||| Sbjct 26146599 TT-GCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 26146633 >seq1724 Length=455154 Score = 143 bits (158), Expect = 5e-32 Identities = 202/279 (72%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || | ||| | | | |||| ||||||||||||||||| | Sbjct 398359 ATGCTCTTAGCTGAGTGTCCCACTGGGCCCGAAGCATTTATTTTGAAAAAATTAGAGTAT 398300 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 || |||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 398299 TCTAAGCAGGCCTGAGCCACCTGGATACTGCAGCTAGGAATAATGGAATAGGACC-GCGG 398241 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||| ||||||||||||| || || | | |||||||| ||||| | || || || Sbjct 398240 TTCCATTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAGGGACGGCCGAGGACGTTC 398181 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | | ||||||| |||||||||| | |||| || | |||||||| Sbjct 398180 GTATTTCACAGCTAGAGGTGCAATTCTTGGACTGGCGCAAGATGGACCAGAGCGAAAGCA 398121 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || ||||| |||||||||||||||| ||| |||| || Sbjct 398120 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAATTT 398083 >seq334 Length=143122389 Score = 118 bits (130), Expect = 2e-24 Identities = 170/235 (72%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 82 GAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAAT 138 |||||||||||||| ||||||||||||| ||| | |||| ||| |||||||| Sbjct 47666222 GAAAAAATTAGAGTATTCAAAGCAGGCCCGAGCTGCCTGGATACCGCAGCTAGGAATAAT 47666163 Query 139 AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||||||||| || |||||||||||||||||| | | | | | || ||||| |||| Sbjct 47666162 GGAATAGGACC-GCAGTTCTATTTTGTTGGTTTTTGGAAATGAGGGCATAATTAAGAGGG 47666104 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAAG 255 || | ||||| | ||||| || || ||||||||||||||||| | | | Sbjct 47666103 ATGGCTGGGGGCATTTGTATTG---TGCCACTAGAGGTGAAATTCTTGGACTGGCACAGG 47666047 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 || || | | |||||| || | ||| ||||||| |||||||| |||||||| Sbjct 47666046 ACGGACCAGAGTGAAAGCATTTGCTAAGAATGTTTTTATTAATCA-AGAACGAAA 47665993 >seq493 Length=115148730 Score = 104 bits (114), Expect = 4e-20 Identities = 174/245 (71%), Gaps = 19/245 (8%) Strand=Plus/Plus Query 82 GAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAAT 138 ||||| |||||||||||| ||||||||| | | | |||| ||| |||||||| Sbjct 114344895 GAAAATATTAGAGTGTTCCAAGCAGGCCCGAGCCACCTGGATACCACAGCTAGGAATAAT 114344954 Query 139 AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGC-CGTAATGATTAATAGG 197 |||||||| || |||||||||||||||||| | ||| | | |||||||| ||| Sbjct 114344955 GGAATAGGA-TCGCAGTTCTATTTTGTTGGTTT-TCGGAAATCAGGGCATGATTAAGAGG 114345012 Query 198 GATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGGATTTATT 251 ||| | |||| | ||||| ||||| |||||||||||||||| | | Sbjct 114345013 GATGGCTGGGG------GCATTCATATTGTGCCACTAGAGGTGAAATTCTTGTACTGGCG 114345066 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 | || || | | |||||| || | ||| |||||||||||||||| ||||||||| Sbjct 114345067 CAGGATGGACCAGAGTGAAAGCATTTGCTAAGAATGTTTTCATTAATCA-AGAACGAAAG 114345125 Query 312 TTAGG 316 || || Sbjct 114345126 TTGGG 114345130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915039986432