Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq406 149 3e-33 seq1162 118 4e-24 seq893 111 7e-22 seq683 105 3e-20 seq91 80.6 1e-12 seq628 75.2 5e-11 >seq406 Length=121039945 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 26108639 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 26108698 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 26108699 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 26108758 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 26109744 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 26109803 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 26109804 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 26109863 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 26153233 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 26153292 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 26153293 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 26153352 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 26107429 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 26107488 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 26107489 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 26107548 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 26107549 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 26107588 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 26150895 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 26150954 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 26150955 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 26151014 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 26151015 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 26151054 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 26151885 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 26151944 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 26151945 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 26152004 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 26152005 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 26152044 >seq1162 Length=100215132 Score = 118 bits (130), Expect = 4e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||| ||||||| |||| ||||||||||| |||||| Sbjct 46773052 TGTTAGGACCCCAAAGATGGTGAACTGTGCCTGAGGAGGGCTAAGCCAGAGGACACTCTG 46772993 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || || ||| |||||||||| |||||| | ||||| ||||||||| Sbjct 46772992 GTGGAGGTCCATTGCAGTGCTGTCGTGCAAATCCATCGTCCGACCTGGGTTTAGGGGCGA 46772933 >seq893 Length=109391073 Score = 111 bits (122), Expect = 7e-22 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | |||| ||||| ||||| ||||||||| |||||| |||| |||||||||| Sbjct 57605049 AGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAGG 57605108 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| | ||| || ||| |||||||||| || || || ||||| | Sbjct 57605109 AAACTCTGGTGGAGGTCTGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTGT 57605168 Query 676 AGGGGC 681 |||||| Sbjct 57605169 AGGGGC 57605174 >seq683 Length=106955855 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||||| || |||||||| |||| ||||| ||||||||||||| Sbjct 50991646 TGTTAGGCACCAAAAGATGGTAAATTATGCCTGGGCAGGGCGAAGCGAGAGGAAACTCTG 50991705 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| ||||||||||| || || || ||||||||||||| Sbjct 50991706 GTGGGGGTCTGTAGTGGTCCTGACGTGCAAATCGGTCATCTGATCTGGGTATAGGGGC 50991763 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||||| || |||||||| |||| ||||| ||||||||||||| Sbjct 51013276 TGTTAGGCACCAAAAGATGGTAAATTATGCCTGGGCAGGGCGAAGCGAGAGGAAACTCTG 51013335 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| ||||||||||| || || || ||||||||||||| Sbjct 51013336 GTGGGGGTCTGTAGTGGTCCTGACGTGCAAATCGGTCATCTGATCTGGGTATAGGGGC 51013393 >seq91 Length=163208435 Score = 80.6 bits (88), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||| ||||||||||||||| |||||| |||| ||||| ||||||| || Sbjct 76202567 TGTTAGGACTTGAAAGATGGTGAACTGTGCCTGGTCAGGGCAAAGCCGGAGGAAA--CTA 76202510 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC-GTCA---AATTTGGGTATAGGG 679 ||||| | | ||| || ||| |||| ||||| ||| |||| || ||||||||||| Sbjct 76202509 GTGGAAGTCCCTAGCAGTCCTGACGTGTAAATCAATCAGTCATCCAACCTGGGTATAGGG 76202450 Query 680 GCGA 683 | || Sbjct 76202449 GTGA 76202446 >seq628 Length=118206036 Score = 75.2 bits (82), Expect = 5e-11 Identities = 70/88 (80%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||| ||||||||| || | |||||| ||||||||| |||||||| | | Sbjct 91814449 AAAGATGGTGAATTATGCCTGAGCAGAGGAAAGCCACAGGAAACTC-GGTGGAGGTTTGT 91814391 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTC 663 || ||| ||| ||||| |||| || || Sbjct 91814390 AGTGGTCCTGATGTGCAGATCGGTCATC 91814363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079624968200