Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq406 241 2e-61 seq334 178 2e-42 seq91 165 1e-38 seq1553 145 1e-32 seq1931 89.7 8e-16 seq1919 89.7 8e-16 seq2654 87.8 3e-15 seq1918 86.0 1e-14 seq1914 75.2 2e-11 >seq406 Length=121039945 Score = 241 bits (266), Expect = 2e-61 Identities = 208/251 (83%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 26147128 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 26147070 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 26147069 CAATCT-CGGGTGGCTG-ACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 26147012 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 26147011 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 26146952 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 26146951 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 26146892 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 26146891 ATCAATCTGTC 26146881 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| || | ||||| |||| | | |||| |||||||||||||| |||||||| ||| Sbjct 25533801 TCAGTGTGGCACACGTGCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTC 25533859 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || || || |||||| | |||| | ||||||||||||| Sbjct 25533860 AATCTCGCA-TGGCTGAATGCCACTTTTCCCTCTAAGAAG 25533898 >seq334 Length=143122389 Score = 178 bits (196), Expect = 2e-42 Identities = 178/226 (79%), Gaps = 19/226 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 47665531 GTCAGTGTAGCGCGCATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 47665589 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC---CAGCCACCAACCATA 131 ||| | || |||||| | |||| | ||||||||||||||| | || || | Sbjct 47665590 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGCTGGGGGATGCCGAC--TG 47665646 Query 132 GTCGATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | ||| ||| |||||| | | |||||||||||||||||||||||||| Sbjct 47665647 CTC-AGGGGTCACATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA 47665705 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||||||||||||||||| |||||||||||| ||||||| Sbjct 47665706 GACAAATCACTCCACCAACTAA----GGCCATGCACCATCACCCAT 47665747 >seq91 Length=163208435 Score = 165 bits (182), Expect = 1e-38 Identities = 188/248 (76%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 |||||| || |||| |||| | ||||| | ||||||||||||||||||||||| || Sbjct 5395307 GTGTAGTGCATGTGCAGCCCCAGATATCTATGAGCATCACAGACCTGTTATTGCCT--AA 5395250 Query 79 CTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC----CATA 131 || | ||| | ||| | ||||||||||||||| | || || || Sbjct 5395249 TCTCAGGTCACTGAACACCACTTGTCCCTCTAAGAAGCTGGGGGATGCCGACTGCTCAGG 5395190 Query 132 G-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||| || ||| | |||| | | |||||||||| |||| |||||||||||||||| Sbjct 5395189 GATCG-TGTAACTAGTCAGCATGCCAGGGTCTCGTTCCTTATTAGAATTAACCAGACAAA 5395131 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || ||||| |||||||||| ||||||||||||||||| ||| |||| |||||||||| || Sbjct 5395130 TCGCTCCAGCAACTAAGAATGGCCATGCACCACCACCTATACAATCGAGAAAGAGCTGTC 5395071 Query 251 AATCTGTC 258 |||||||| Sbjct 5395070 AATCTGTC 5395063 >seq1553 Length=133034539 Score = 145 bits (160), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||| ||||||| | ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 16310219 GTCAGCGTAGCGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 16310161 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCCACCA 125 ||| | || |||||| | |||| |||||||||||||| | | | | Sbjct 16310160 CAATC-TCAGGTGGCTGAATGCCACCTGTCCCTCTAAGAAGTTGGGGGATGCTGACTGC- 16310103 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | |||| || ||| |||||| | | |||||||| |||||||||||||| ||| Sbjct 16310102 TCGGGGGTCG-TGTAACTAGTTAGCATGCCAGAGTCTCGTTTGTTATCGGAATTAAACAG 16310044 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||| ||||||||||||||||| ||||||||| Sbjct 16310043 ACAAATTACTCCACCAACTAAGAATGGCCATGCA 16310010 >seq1931 Length=242463 Score = 89.7 bits (98), Expect = 8e-16 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| || | ||||| |||| | | |||| |||||||||||||| |||||||| || Sbjct 91540 GTCAGTGTGGCACACGTGCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CT 91482 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 91481 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 91442 >seq1919 Length=202788 Score = 89.7 bits (98), Expect = 8e-16 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| || | ||||| |||| | | |||| |||||||||||||| |||||||| || Sbjct 174767 GTCAGTGTGGCACACGTGCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CT 174825 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 174826 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 174865 >seq2654 Length=14085 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| || | ||||| |||| | | |||| |||||||||||||| |||||||| ||| Sbjct 12638 TCAGTGTGGCACACGTGCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CTC 12696 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || || || |||||| | |||| | ||||||||||||| Sbjct 12697 AATCTCGCA-TGGCTGAATGCCACTTTTCCCTCTAAGAAG 12735 >seq1918 Length=540987 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| || | ||| | |||| | | |||| |||||||||||||| |||||||| || Sbjct 160596 GTCAGTGTGGCACACGTTCAGCCCTGGATATCTGAGGGCATCACAGACTTGTTATTG-CT 160654 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| || || |||||| | |||| | ||||||||||||| Sbjct 160655 CAATCTCGCA-TGGCTGAATGCCACTTATCCCTCTAAGAAG 160694 >seq1914 Length=51576 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| || | ||||| || | | | |||| |||||||||||||| ||| |||| || Sbjct 17471 GTCAGTGTGGCACACGTGCAGCTCTGGATATCTGAGGGCATCACAGACTTGTGATTG-CT 17413 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 ||| | || |||||| | ||| | ||||||||||||| Sbjct 17412 CAATC-TCGGGTGGCTGAACACCACTTGTCCCTCTAAGAA 17374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796665041004