Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq406 347 2e-93 seq6377 322 8e-86 seq683 190 3e-46 seq1685 105 1e-20 seq565 87.8 3e-15 seq1399 75.2 2e-11 >seq406 Length=121039945 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 26158149 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 26158090 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 26158089 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 26158030 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26158029 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 26157970 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 26157969 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 26157910 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 26157909 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 26157856 Score = 334 bits (370), Expect = 1e-89 Identities = 253/294 (86%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 26111638 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 26111579 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 26111578 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 26111519 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26111518 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 26111459 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||| |||||| |||||| | | Sbjct 26111458 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAAC-TTTCTGACACCTCCTG-C 26111401 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 26111400 TTAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 26111347 >seq6377 Length=4670 Score = 322 bits (356), Expect = 8e-86 Identities = 249/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 4230 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 4289 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4290 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 4349 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||| Sbjct 4350 AATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGATGTCGCTA 4409 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| ||||| | |||||||||||||||||||||| |||||||||||||||||| || Sbjct 4410 TGAATGCTTGACCACCACAAGCCAGTTATCCCTGTGTTAACTTTTCTGGCACCTCCTGCT 4469 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | ||||||| ||||| | |||||| ||| |||||||| Sbjct 4470 TAAAACCCAAAAGGTCAGCAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 4524 >seq683 Length=106955855 Score = 190 bits (210), Expect = 3e-46 Identities = 145/171 (85%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| |||| |||||||| |||||| ||||||| ||| ||||||| Sbjct 50994556 GTAAAACTAACCTGTCTCACGACGTTCTAAACCAAGCTCAGGTTCCCTGTTATTGGGTGA 50994497 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || ||||||||||| |||||||| ||| | ||||||||| || ||| | |||||| Sbjct 50994496 ACCATCCAACGCTTGGTGAATTCTGTTTC---ACAATAGGAAGATCCAACACCAAAGGAT 50994440 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||| |||||||||||| |||||| | ||||| ||||||||||| Sbjct 50994439 CAAAAAGCAATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCT 50994389 Score = 190 bits (210), Expect = 3e-46 Identities = 145/171 (85%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| |||| |||||||| |||||| ||||||| ||| ||||||| Sbjct 51020074 GTAAAACTAACCTGTCTCACGACGTTCTAAACCAAGCTCAGGTTCCCTGTTATTGGGTGA 51020015 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || ||||||||||| |||||||| ||| | ||||||||| || ||| | |||||| Sbjct 51020014 ACCATCCAACGCTTGGTGAATTCTGTTTC---ACAATAGGAAGATCCAACACCAAAGGAT 51019958 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||| |||||||||||| |||||| | ||||| ||||||||||| Sbjct 51019957 CAAAAAGCAATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCT 51019907 >seq1685 Length=141252148 Score = 105 bits (116), Expect = 1e-20 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| | ||||||||||||| ||| ||||||||||||||| |||| |||| Sbjct 64622213 AATTCTGCTTCACAACGATAGGAAGAGCCAACAGTGAAGGATCAAAAAGCCACGTTGCTA 64622272 Query 180 TGAACGCTTGGCTGCCACAAGCC 202 ||||| ||||||||||||||||| Sbjct 64622273 TGAACTCTTGGCTGCCACAAGCC 64622295 >seq565 Length=117381234 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| |||| |||| |||||||||||| || |||||||| ||||||| |||| Sbjct 65850576 TAGGAAGAGCCAACATTGAAGCATCAAAAAGCAAGGTTGCTATGAATGCTTGGCAGCCAT 65850635 Query 198 AAGCCAGT 205 |||||||| Sbjct 65850636 AAGCCAGT 65850643 >seq1399 Length=81552678 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || ||||||||||||| |||||||||| |||||||| Sbjct 28053627 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAGGCCAGTTATCTCTGTGGTA 28053682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854250616704