Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq406 387 4e-105 seq493 324 4e-86 seq334 250 8e-64 seq1 154 4e-35 >seq406 Length=121039945 Score = 387 bits (428), Expect = 4e-105 Identities = 421/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 26146165 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 26146106 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26146105 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 26146046 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 26146045 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 26145986 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 26145985 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 26145926 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 26145925 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 26145866 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 26145865 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 26145807 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 26145806 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 26145749 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 26145748 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 26145689 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 26145688 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 26145629 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 26145628 CATATG-CTACTGGCAG 26145613 >seq493 Length=115148730 Score = 324 bits (358), Expect = 4e-86 Identities = 414/566 (73%), Gaps = 71/566 (13%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||||| ||||||| ||||| | |||||||||| Sbjct 114344347 ACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTC 114344288 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 114344287 CCCAGGTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 114344228 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||||||||||| ||||||||| |||||| | |||||||||| Sbjct 114344227 CTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 114344168 Query 182 GCCACTAT----CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | ||| |||||||||||||||||| ||||| | || |||| |||| | | Sbjct 114344167 G----TATGGCGACTACCATCGAAAGTTGATGGGGCAAACGTTCTAATGGGTCATCACTG 114344112 Query 238 GCTC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACC-AAGGAG---------- 283 | | || | |||||| | | ||||| || ||||| ||| || Sbjct 114344111 CCACGGGGGGCGTGCGATCAGCCGGAGGTTATCTAGAGTCACCAAAGCAGCTGGCACGCC 114344052 Query 284 ---------CCCCG--AAGGGC---------------GTTGGTT--TTTTATCTAATAAA 315 ||||| ||||| ||||| ||| |||| ||||| Sbjct 114344051 CCCCCCCCACCCCGGCCAGGGCCAGAAGATGGGCTGATATGGTTGGTTTCATCTGATAAA 114343992 Query 316 TACACCCCTTCC---------GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 | ||| | | || || ||| | | | | |||||||||||||||||||||| Sbjct 114343991 TTCACGCATCCCCCCGCGAAGGAGGTCAGCGCTCATCGGCATGTATTAGCTCTAGAATTA 114343932 Query 366 CCACGGTTATCCATGTAGTA----AGGTA-CTATCAAATAAACGATAACTGATTTAATGA 420 |||| |||||||| |||| | ||| | | | |||| | | |||||||||||||||| Sbjct 114343931 CCACAGTTATCCAAGTAGGAGAGGAGGCAGCGACCAAAGGAGCCATAACTGATTTAATGA 114343872 Query 421 GCCATTCGCAGTTTCACTGTATAG--ATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 114343871 GCCATTCGCAGTTTCACTGTACCGGCCATGC--CTACTTAGACATGCATGGCTTAATCTT 114343814 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| | |||||||||| Sbjct 114343813 TGAGACAAGCATA-GGCTACTGGCAG 114343789 >seq334 Length=143122389 Score = 250 bits (276), Expect = 8e-64 Identities = 191/225 (85%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | |||||| ||| Sbjct 47666775 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTAGCTC 47666834 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 47666835 CCCAGGTCGGGAGTGGGTAATTTGCGGGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 47666894 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||||||||||| ||||||||| |||||| | |||||||||| Sbjct 47666895 CTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 47666954 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || |||||||||||||||||| ||||| | ||| |||| Sbjct 47666955 GCACGGCGACTACCATCGAAAGTTGATGGGGCAAACATTCAAATG 47666999 Score = 168 bits (186), Expect = 2e-39 Identities = 142/168 (85%), Gaps = 10/168 (6%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTA-CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | ||| | | | |||| Sbjct 47667171 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGAAGAGGAGGCAGCGACCAAA 47667230 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACT 456 ||| |||||| ||||||||||||||| |||||||||||||| || ||| || || Sbjct 47667231 GGAACCATAACTTATTTAATGAGCCATTAGCAGTTTCACTGTACCAGCCGTGCCTA--CT 47667288 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 47667289 TAGACATGCATGGCTTAATCTTTGAGACAAGCATTTG-CTACTGGCAG 47667335 >seq1 Length=122973662 Score = 154 bits (170), Expect = 4e-35 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 || ||| ||||||| ||||| ||||||||||||| | | | |||| ||||||||||| Sbjct 5685223 AATGAGTCCTGTATTTTTATTTTTTGTCACTACCTCTCTGGATTGGGAGTGGGTAATTTG 5685282 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 | || |||||||||||||||||||||||||| |||||||| ||| | ||| |||||| | Sbjct 5685283 CATGCTTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGACTCTCACTCTGGAATCAA 5685342 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| | || |||| | | || |||||||| || |||| |||||| Sbjct 5685343 ACCCTGATTCGCTGTCACCCATGGTCACTGTGGTAGGCATGGTGACTGTCATCAAAAGTT 5685402 Query 206 GATAGGGCAG 215 |||| ||||| Sbjct 5685403 GATATGGCAG 5685412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510135921664