Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1685 219 3e-52 seq1724 210 2e-49 seq1115 107 2e-18 seq1162 95.1 1e-14 seq1399 82.4 6e-11 >seq1685 Length=141252148 Score = 219 bits (242), Expect = 3e-52 Identities = 520/774 (67%), Gaps = 24/774 (3%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || ||||||||||| | | ||| |||| ||||| || |||||||| |||||||||||| Sbjct 47456376 TTTCCCATCGAGTACCATGGTATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGG 47456435 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG--ACTGGGAGCGTTTATCGAGCG 61183 || |||||||| || ||||||| ||||| || ||||||| | | || Sbjct 47456436 ACCACCGAGGAGGTGGACCTGTCCAAGGACAT---TGGCACTGGGAATCCCTGAAGCCCG 47456492 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | |||| || ||||| ||| |||||||| || || || || || | Sbjct 47456493 GGGAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGCGATGGCATAGTAA 47456552 Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||| ||||| |||| || ||| || | || | || | | || || || |||||| Sbjct 47456553 ATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTT-CAGATTACAGAAGCCCGCTGTTTC 47456611 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || |||||||| ||||||||||| || | || || || ||||| ||| | || || || Sbjct 47456612 TATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGAC 47456671 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||||||| || | ||| | ||| | ||||||||||| || ||||| || Sbjct 47456672 ACTTACATCAAAGATCTCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCT 47456731 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACAT 61480 || ||| ||| || ||||||||||| ||||| | |||| ||| || | Sbjct 47456732 TGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGAT--TGGGGACAAAGAGGCCACCT 47456789 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG---TGTATTTTTCAGTGGATCGT 61537 ||||||||| | | || || || | || || || | |||| |||| || | Sbjct 47456790 ATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCCAGT---TCTT 47456846 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 |||| | || || ||| | |||||||| ||||| ||||| || || || || ||||| Sbjct 47456847 TTGCATCGATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATG 47456906 Query 61598 AGTTGA-TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 | || | || || | || ||||| | || |||||||||| ||| | ||||||| Sbjct 47456907 AATTTATTAGCA-GAGATGAGGGTTTACA--CTGATTTTGCTTGCTTGATGTTCAAAC-- 47456961 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | ||||| | | ||||||||| | ||| | || || || | || || Sbjct 47456962 -ACCTGGTACACAAACTATCGGAGGAGAGAGTGAGAGAAATAATTATCAATGCTGTTCAG 47457020 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || ||||||||||| || || || || ||||| || ||||| || |||||||| Sbjct 47457021 ATAGAACAGGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACT 47457080 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT 61830 |||||| ||| || ||||| ||||| || ||| | || || | || ||||| Sbjct 47457081 CTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGT 47457134 >seq1724 Length=455154 Score = 210 bits (232), Expect = 2e-49 Identities = 501/746 (67%), Gaps = 16/746 (2%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 |||||||||||||| | ||||| |||| ||||| |||||||| || |||||||||||| Sbjct 266280 TTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAAAAGGCAGAGGCTTCCTTCTGG 266221 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCG 61183 || |||||||| || ||||||| ||||| | ||||||| | | | | | | Sbjct 266220 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTCAGCACTGGGAATCCCTGAAGCCCGAG 266161 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | |||| || | | | ||| |||||||| || || || || || | Sbjct 266160 GAGAG--ATATTTTATATCCCGTCTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAA 266103 Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||| ||||| |||| || ||| || | || | || | | || || | |||||| Sbjct 266102 ATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTT-CAGATTACAGAAGCCTGCTGTTTC 266044 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || | |||||| ||||||||||| || | || || || ||||| ||| | || || || Sbjct 266043 TATGTCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGAC 265984 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||||||| || ||| | ||| | || ||||||||||| ||||| || Sbjct 265983 ACTTACATCAAAGATGCCAAAGAAAGGGAATTTCTCTTTAATGCCATCGAAACGATGCCT 265924 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACAT 61480 || ||| ||| || ||||| ||||| ||||| | |||| ||||| | Sbjct 265923 TGCGTCAAGAAGAACGCAGATTGAGCCTTGTGCTGGAT--TGGGGACAAAGAGGCTATCT 265866 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||||||||| | | || ||||| | || || || | || || || || |||| Sbjct 265865 ATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTG 265806 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AG 61599 | | || || ||| | |||||||| ||||| ||||| || || || || |||| | Sbjct 265805 CATCGATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCGAATGAAC 265746 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 || || || | || ||||| | || ||||||||||||| ||| | |||||| || Sbjct 265745 TTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCTG-CTTGATGTTCAAA---TAC 265691 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 |||||| | || ||||||||| | ||| | || | || | || || || Sbjct 265690 CTGGTGCACAAACCATCGGAGGAGAGAGTGAGAGAAACAATTATCAATGCTGTTCAGATA 265631 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 ||||||||||| || ||||| || ||||| | ||||| || |||||||| ||| Sbjct 265630 GAACAGGAATTCCTCACTGAGGCCTTGCCTATGAAGCTCATTGGGATGAATTGCACTCTA 265571 Query 61780 ATGTCGCAGTATATTGAATTTGTTGC 61805 ||| ||| | ||||| ||||| || Sbjct 265570 ATGAAGCAATGCATTGAGTTTGTGGC 265545 >seq1115 Length=110690730 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 66335617 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 66335558 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 66335557 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTCTG 66335498 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 66335497 AGACTCAATGATGGCATACCAAAG 66335474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 66339430 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCGCCATAATAAATAGTTTCAAAG 66339371 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 66339370 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 66339311 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 66339310 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 66339267 >seq1162 Length=100215132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| || |||||| Sbjct 56828482 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTTATCGAGAAT 56828423 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 56828422 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 56828376 >seq1399 Length=81552678 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 9731946 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 9732005 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| ||||| |||||||| | |||||||| Sbjct 9732006 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCTTTCTGGACCGCCGAGGAGGT 9732060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397483283725760