Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7814 174 2e-41 seq2260 174 2e-41 seq9875 114 2e-23 seq7090 114 2e-23 seq9209 107 3e-21 seq9244 93.3 6e-17 seq6 93.3 6e-17 seq15 78.8 1e-12 >seq7814 Length=1034 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 945 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 888 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 887 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 828 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 827 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 768 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 767 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 715 >seq2260 Length=1037 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 839 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 782 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 781 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 722 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 721 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 662 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 661 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 609 >seq9875 Length=63937927 Score = 114 bits (126), Expect = 2e-23 Identities = 170/234 (73%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | |||| ||||| ||||| ||| ||||| |||||| | Sbjct 184395 GTACAAAGGGCAGGGACTTC----ACGCAAGCTT-ATGACCCGCATTTACTGGGAATT-C 184342 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||| ||||| | | | ||||| || || Sbjct 184341 CTCGTTCATGGGGAAAAATTGCAATCCCCGATCACCATCGCCAATGAGGTTCAACAGGTT 184282 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | | ||| | || || ||| ||||||||| |||| ||| Sbjct 184281 ACCCACATCTGCCACATAGGGT-AGGCACACGCTGAGCCAGTCAGTGTAGTGCGCATGCA 184223 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 184222 GCCCTGGACATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 184170 Score = 111 bits (122), Expect = 2e-22 Identities = 169/234 (72%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | |||| ||||| ||||| || |||||| |||||| | Sbjct 195266 GTACAAAGGGCAGGGACTTC----ACGCAAGCTT-ATGACCAGCACTTACTGGGAATT-C 195213 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| ||| |||| | | | ||||| || || Sbjct 195212 CTCATTCATGGGGAAAAATTGCAATCCCTGATCACCATTGCCAATGAGGTTCAACAGGTT 195153 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | | ||| | || || ||| |||||||||||||||||| Sbjct 195152 ACCCACATCTGCCACATAGGGT-AGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 195094 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 195093 GCCCTGGACATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 195041 Score = 98.7 bits (108), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| ||||||||||| | | | ||||| ||||| ||| |||||| |||| ||| Sbjct 309317 GTACACAGGGCAGGGACTTC----AGGTAAGCTT-ATGACCCGCACTTACT-GGAAATTC 309370 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | ||||||||||||| |||| || || Sbjct 309371 CTCCTTCATGGGGAATAATTGCAATCCCCCATCCCCATCACGAATGGGGTTCAGCAGGTT 309430 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| ||| | | ||| | | || | ||| |||||||||||| |||| Sbjct 309431 ACCCGCCTCTGCCACGTAGGGTAGGCAAACAC--TGAGCCAGTCAGTGTAGCGCATGTGC 309488 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||| ||||||| Sbjct 309489 AGCCCTGGACATCTAAGGGCATCACAGACCTATTATTGC 309527 >seq7090 Length=2896 Score = 114 bits (126), Expect = 2e-23 Identities = 167/226 (74%), Gaps = 15/226 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| ||||||||||| | | || ||||| ||||| ||| |||||| |||| ||| Sbjct 1949 GTACATAGGGCAGGGACTTC----AGGCAAGCTT-ATGACCCGCACTTACT-GGAAATTC 1896 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | ||||||||||||| ||||| || || Sbjct 1895 CTCCTTCATGGGGAATAATTGCAATCCCCCATCCCCATCACGAATGGGGTTCAACAGGTT 1836 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||| | ||| | |||| | | ||| || || ||| |||||||||||||||| Sbjct 1835 ACCTG--CCTCT--GCCACGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT 1780 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || | || | |||||||||||||||||||| ||||||||| ||||| Sbjct 1779 GCAGTCCCGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAA 1735 >seq9209 Length=1036 Score = 107 bits (118), Expect = 3e-21 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGC 135 ||||||||| | ||||||||||||| ||||| | ||||||| |||| |||| Sbjct 23 AATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGC 82 Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 ||| | || || ||| |||||||||||||||||| |||| | ||||||||| Sbjct 83 GTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAG 142 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||| ||||| || ||||| Sbjct 143 GGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 179 >seq9244 Length=1058 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 1057 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 999 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 998 AATCTCGGGTGGC 986 >seq6 Length=183735486 Score = 93.3 bits (102), Expect = 6e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 |||||| || |||| || ||||| ||||| || ||||||||||||| ||||| | | | Sbjct 177357969 CAGGGATTTAATCAATGCAAGCTT-ATGACCTGCACTTACTAGGAATT-CCTCGGTCATG 177358026 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCT 129 || ||||||||| | ||||||||||||| | ||||| || ||||| | ||| Sbjct 177358027 GGGAATAATTGCAATCCCCAATCCCCATCACGAATAGGGTTCAAGAGTTTACCAGCGCCT 177358086 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | || ||| || || | ||| | |||||| || ||||| |||| | | Sbjct 177358087 GCTGGTGTAGGGGAGGCACACACTGAGCCAGTTGGTGTAGTGCACGTGCAGCCCCAGATA 177358146 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | || | || ||||||||||||||||||| ||| ||| Sbjct 177358147 TATATGAGCGTCACAGACCTGTTATTGCC-CAATCTT 177358182 >seq15 Length=107357366 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||| || | ||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 89845731 TCAGTGTAGTGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 89845789 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 89845790 AATCTCAGGTGGC 89845802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751925153910