Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9 122 4e-25 seq12 109 2e-21 seq20 105 3e-20 seq6 84.2 9e-14 seq5 84.2 9e-14 >seq9 Length=144709823 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||| ||||||| |||| |||||||||||| | |||| Sbjct 49654483 TGTTAGGACCCCAAAGATGGTGAACTGTGCCTGAGGAGGGCGAAGCCAGAGGACAGTCTG 49654424 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || || || | | |||||||||| |||||| | ||||||||||||||| Sbjct 49654423 GTGGAGGTCCGTTGCAGTGCAGTCGTGCAAATCCATCGTCCGACCTGGGTATAGGGGCGA 49654364 Score = 104 bits (114), Expect = 1e-19 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| || |||| ||| ||||||| |||||||||||||| | | ||||| Sbjct 66503342 GAGCATGAGCACAGGTGTTAGGAAATGAAAGATTGTGAACTATGCCTGGGCAAGATGAAG 66503283 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| |||||||||| |||| ||| ||| | |||||||||| ||| || Sbjct 66503282 CCAGAGGAAA--CTGGTGGAGGTCCGCAATGGTCCTGATGGGCAAATCGATTGTCCAACC 66503225 Query 669 TGGGTATAGGG 679 ||| ||||||| Sbjct 66503224 TGGATATAGGG 66503214 >seq12 Length=134183262 Score = 109 bits (120), Expect = 2e-21 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| | |||||| |||| ||||||||||||| | || ||| |||||| | | | ||| Sbjct 84147862 CTTCCAGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATTTAAG 84147921 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| |||||| |||| ||||||| || | ||||| ||||||| || Sbjct 84147922 GCTAAATACCGGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAAC 84147981 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| | |||| ||| || || ||||||| Sbjct 84147982 TTTGAAGAGAGCGTTCAAGAGGGCGTGAAA 84148011 >seq20 Length=64411610 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| ||||| ||||||||||||| Sbjct 23982582 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCGAGAGGAAACTCTG 23982523 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| ||||||||||| || || || ||||||||||||| Sbjct 23982522 GTGGGGGTCTGTAGTGGTCCTGACGTGCAAATCGGTCATCTGATCTGGGTATAGGGGC 23982465 >seq6 Length=183735486 Score = 84.2 bits (92), Expect = 9e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || |||||||||||| || |||| |||||| | | |||| ||||||| Sbjct 124824842 GAGTTGGGCTGCTTGGGAATGCAGACGAAAGTGGGTGGTAAACTCCATCTATGGCTAAAT 124824901 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| | | |||||| ||||||| |||| | | Sbjct 124824902 ACTGGCATGAGACCAATAGTCAACAAGTACCATAAGCGAAAGTTGAAAAGAACTTAGAAG 124824961 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 124824962 AGAGACTTCAAGAG 124824975 >seq5 Length=195804263 Score = 84.2 bits (92), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| || | |||||| ||||||||| |||||||| | | Sbjct 110084268 AAAGATGGTGAACTATGCCTGAGCAGAGGAAAGCCACAGGAAACTC-GGTGGAGGTTTGT 110084210 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 || ||| ||| ||||| |||| || || | |||||||| Sbjct 110084209 AGTGGTCCTGATGTGCAGATCGGTCATCTGACCTGGGTATA 110084169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079779622700