Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq24 223 3e-53
seq12 107 2e-18
seq9 98.7 8e-16
seq2 82.4 6e-11
>seq24
Length=155392059
Score = 223 bits (246), Expect = 3e-53
Identities = 602/905 (67%), Gaps = 27/905 (3%)
Strand=Plus/Minus
Query 61037 TGCAAGAG--AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCG 61094
||| |||| || ||| | || || || | |||||| ||||||| | ||||| ||||
Sbjct 44584380 TGCGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCA 44584321
Query 61095 CATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGA 61154
||||| || |||||||| |||||||||||||| |||||||| || ||||||| ||
Sbjct 44584320 GATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGA 44584261
Query 61155 CATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212
||| ||||||| | | | | || || | |||| || ||||| ||
Sbjct 44584260 CATTCGGCACTGGGAATCCCCGAAGCCCGAGGAGAG--ATATTTTATATCCCATGTTCTG 44584203
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCA 61271
| |||||||| || || || || || ||||| ||||| |||| || ||| || |
Sbjct 44584202 GTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAA 44584143
Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331
|| | || | | || || || |||||||| |||||||| ||||||||||| || |
Sbjct 44584142 ATAGTT-CAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACAT 44584084
Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391
|| || || ||||| ||| | || || || || ||||||| || | ||| ||
Sbjct 44584083 ACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGGA 44584024
Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
| | ||||||||||| || ||||| || || ||| | || |||||||||||
Sbjct 44584023 ATTTCTCTTCAATGCCATTGA-ACGATGCCTTGTGTCAAGAAGGCGGCAGATTGGGCCTT 44583965
Query 61452 CAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509
||||| | |||| |||||| | ||||||||| | | || || || |
Sbjct 44583964 GTGCTGGAT--TGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCA 44583907
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
|| || || | || || ||| || ||||| | || || ||| | |||||||| |||
Sbjct 44583906 GTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGA 44583847
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTG 61628
|| ||||| || || || || ||||| | || || || | || ||||| | || ||
Sbjct 44583846 CTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTG 44583788
Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688
|||||||||| ||| | ||||||| | ||||| | || ||||||||| ||
Sbjct 44583787 TGATTTTGCTTGCTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGT 44583731
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748
| | || || || | || || || ||||| ||||| || || || || |||||
Sbjct 44583730 GAGAGAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCC 44583671
Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808
|| ||||| || |||||||| |||||| ||| || ||||| ||||| || ||
Sbjct 44583670 TGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 44583611
Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGAT 61866
| | || || | || ||||| | ||| || | | | | | | |||||||||
Sbjct 44583610 CAGACTTATGCTGGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGAC 44583553
Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926
|| | ||| | ||||| || | ||||| || || || |||| | ||||||||
Sbjct 44583552 TTTACGGAGAATATTTCACT-----GAAAGACTAACTTCTTTGAGAGGAGAGTAGGCGAG 44583498
Query 61927 TATCA 61931
|||||
Sbjct 44583497 TATCA 44583493
>seq12
Length=134183262
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| ||
Sbjct 4096311 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 4096252
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||
Sbjct 4096251 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCCGTCTG 4096192
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 4096191 AGACTCAATGATGGCATACCAAAG 4096168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749
|||| |||||||||||| | |||||||| || || || || ||||||| || || ||
Sbjct 4100145 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCATAATAAATAGTTTCAAAG 4100086
Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809
|| | ||| ||| | || || | ||||| | || | |||||||| ||||
Sbjct 4100085 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 4100026
Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853
| || ||||||||||| || ||||| || ||||| ||||| ||
Sbjct 4100025 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 4099982
>seq9
Length=144709823
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 101036519 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 101036460
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 101036459 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 101036413
>seq2
Length=114371477
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| || || || ||| || || || || || || | |||||||||||||| | |
Sbjct 10276675 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 10276734
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|||| |||| ||||| || ||||| || |||||||||||||| | ||||||||
Sbjct 10276735 ATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGT 10276789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397518218771360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |