Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq24 223 3e-53 seq12 107 2e-18 seq9 98.7 8e-16 seq2 82.4 6e-11 >seq24 Length=155392059 Score = 223 bits (246), Expect = 3e-53 Identities = 602/905 (67%), Gaps = 27/905 (3%) Strand=Plus/Minus Query 61037 TGCAAGAG--AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCG 61094 ||| |||| || ||| | || || || | |||||| ||||||| | ||||| |||| Sbjct 44584380 TGCGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCA 44584321 Query 61095 CATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGA 61154 ||||| || |||||||| |||||||||||||| |||||||| || ||||||| || Sbjct 44584320 GATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGA 44584261 Query 61155 CATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 ||| ||||||| | | | | || || | |||| || ||||| || Sbjct 44584260 CATTCGGCACTGGGAATCCCCGAAGCCCGAGGAGAG--ATATTTTATATCCCATGTTCTG 44584203 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCA 61271 | |||||||| || || || || || ||||| ||||| |||| || ||| || | Sbjct 44584202 GTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAA 44584143 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || | || | | || || || |||||||| |||||||| ||||||||||| || | Sbjct 44584142 ATAGTT-CAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACAT 44584084 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 || || || ||||| ||| | || || || || ||||||| || | ||| || Sbjct 44584083 ACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGGA 44584024 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 | | ||||||||||| || ||||| || || ||| | || ||||||||||| Sbjct 44584023 ATTTCTCTTCAATGCCATTGA-ACGATGCCTTGTGTCAAGAAGGCGGCAGATTGGGCCTT 44583965 Query 61452 CAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 ||||| | |||| |||||| | ||||||||| | | || || || | Sbjct 44583964 GTGCTGGAT--TGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCA 44583907 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || || || | || || ||| || ||||| | || || ||| | |||||||| ||| Sbjct 44583906 GTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGA 44583847 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTG 61628 || ||||| || || || || ||||| | || || || | || ||||| | || || Sbjct 44583846 CTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTG 44583788 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 |||||||||| ||| | ||||||| | ||||| | || ||||||||| || Sbjct 44583787 TGATTTTGCTTGCTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGT 44583731 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | || || || | || || || ||||| ||||| || || || || ||||| Sbjct 44583730 GAGAGAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCC 44583671 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || ||||| || |||||||| |||||| ||| || ||||| ||||| || || Sbjct 44583670 TGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 44583611 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGAT 61866 | | || || | || ||||| | ||| || | | | | | | ||||||||| Sbjct 44583610 CAGACTTATGCTGGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGAC 44583553 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 || | ||| | ||||| || | ||||| || || || |||| | |||||||| Sbjct 44583552 TTTACGGAGAATATTTCACT-----GAAAGACTAACTTCTTTGAGAGGAGAGTAGGCGAG 44583498 Query 61927 TATCA 61931 ||||| Sbjct 44583497 TATCA 44583493 >seq12 Length=134183262 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 4096311 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 4096252 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 4096251 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCCGTCTG 4096192 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 4096191 AGACTCAATGATGGCATACCAAAG 4096168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || || || ||||||| || || || Sbjct 4100145 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCATAATAAATAGTTTCAAAG 4100086 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 4100085 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 4100026 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 4100025 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 4099982 >seq9 Length=144709823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 101036519 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 101036460 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 101036459 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 101036413 >seq2 Length=114371477 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 10276675 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 10276734 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || ||||| || |||||||||||||| | |||||||| Sbjct 10276735 ATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGT 10276789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518218771360