Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1403 105 4e-21 seq1395 105 4e-21 seq1651 100 2e-19 seq4061 98.7 6e-19 seq1197 91.5 8e-17 seq148 86.0 3e-15 >seq1403 Length=321896 Score = 105 bits (116), Expect = 4e-21 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 297123 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCCGCCAC 297064 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 297063 ATCTCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 297008 >seq1395 Length=66533130 Score = 105 bits (116), Expect = 4e-21 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 30932836 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCCGCCAC 30932777 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 30932776 ATCTCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 30932721 >seq1651 Length=26350515 Score = 100 bits (110), Expect = 2e-19 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 || |||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 15301712 AATCCAAAGACTTTGGTTTCTGGGAAGCTGCCCAGCGGGTCATGGAAATAACGCCGCCGC 15301653 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 ||| | ||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 15301652 ATCACCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCG 15301598 Score = 100 bits (110), Expect = 2e-19 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 || |||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 16232806 AATCCAAAGACTTTGGTTTCTGGGAAGCTGCCCAGCGGGTCATGGAAATAACGCCGCCGC 16232865 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 ||| | ||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 16232866 ATCACCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCG 16232920 Score = 100 bits (110), Expect = 2e-19 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 || |||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 16266061 AATCCAAAGACTTTGGTTTCTGGGAAGCTGCCCAGCGGGTCATGGAAATAACGCCGCCGC 16266120 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 ||| | ||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 16266121 ATCACCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCG 16266175 >seq4061 Length=12628 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 8514 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 8573 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 8574 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 8630 >seq1197 Length=81586097 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC-C 60 ||| ||||||||||| ||||| | ||| |||| |||| |||| |||||| |||| | Sbjct 34810423 AACGCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCAC 34810482 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | | || ||||||| | ||||| || | ||||| ||||||||||||||||||||| Sbjct 34810483 GTTGCC-AGTCGGCTTCGTTTATGGACAGAACTACCACGGTATCTGATCGTCTTCGA 34810538 >seq148 Length=133216015 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||| |||| | ||||| | ||| |||| |||| |||| |||||| |||| Sbjct 21865401 AACCCAAGGACT--GGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCAC 21865458 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| | ||| ||||||||||||||||||||| Sbjct 21865459 ATCGCCAGTCGGCATCGTTTATGGTCGGAATTACAACGGTATCTGATCGTCTTCGA 21865514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278283988110