Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4061 149 3e-33 seq793 122 4e-25 seq1836 120 1e-24 seq19 116 2e-23 seq1 116 2e-23 seq1657 113 2e-22 seq1651 113 2e-22 seq1024 113 2e-22 seq1824 109 2e-21 seq1345 105 3e-20 seq252 84.2 9e-14 seq208 84.2 9e-14 >seq4061 Length=12628 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 3917 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 3858 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 3857 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 3798 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 5142 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 5083 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 5082 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 5023 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 5022 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 4983 >seq793 Length=147911612 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||| ||||||| |||| |||||||||||| | |||| Sbjct 56842204 TGTTAGGACCCCAAAGATGGTGAACTGTGCCTGAGGAGGGCGAAGCCAGAGGACAGTCTG 56842145 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || || || | | |||||||||| |||||| | ||||||||||||||| Sbjct 56842144 GTGGAGGTCCGTTGCAGTGCAGTCGTGCAAATCCATCGTCCGACCTGGGTATAGGGGCGA 56842085 Score = 104 bits (114), Expect = 1e-19 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| || |||| ||| ||||||| |||||||||||||| | | ||||| Sbjct 69482733 GAGCATGAGCACAGGTGTTAGGAAATGAAAGATTGTGAACTATGCCTGGGCAAGATGAAG 69482674 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| |||||||||| |||| ||| ||| | |||||||||| ||| || Sbjct 69482673 CCAGAGGAAA--CTGGTGGAGGTCCGCAATGGTCCTGATGGGCAAATCGATTGTCCAACC 69482616 Query 669 TGGGTATAGGG 679 ||| ||||||| Sbjct 69482615 TGGATATAGGG 69482605 >seq1836 Length=6921 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| ||||| ||||||||| |||||| |||| ||||||||| Sbjct 186 GAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAG 245 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || ||| || ||| |||||||||| || || || ||||| Sbjct 246 GAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTG 305 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 306 TAGGGGCGA 314 >seq19 Length=87214 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| ||||| ||||||||| ||||| |||| ||||||||| Sbjct 86839 GAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTAGGCAGGGCAAAGCCAGAG 86898 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || ||| || ||| |||||||||| || || || ||||| Sbjct 86899 GAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTG 86958 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 86959 TAGGGGCGA 86967 >seq1 Length=228573443 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| ||||| ||||||||| |||||| |||| ||||||||| Sbjct 115722824 GAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAG 115722883 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || ||| || ||| |||||||||| || || || ||||| Sbjct 115722884 GAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTG 115722943 Query 675 TAGGGGCGA 683 | ||||||| Sbjct 115722944 TCGGGGCGA 115722952 >seq1657 Length=238541 Score = 113 bits (124), Expect = 2e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| || |||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 168583 TGTTAGGACCTGAGAGATGGTGAACTATGCTTGGACAGGGTGGAGCCAGAGGAAACTCTG 168642 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || ||||| ||| || |||||| || | | ||||||||||||| || Sbjct 168643 GTGGAGGTCCGTAGCGGCCCTGATGTAGAAATCGGTCTTTCGACTTGGGTATAGGGGTGA 168702 >seq1651 Length=26350515 Score = 113 bits (124), Expect = 2e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| || |||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 7291397 TGTTAGGACCTGAGAGATGGTGAACTATGCTTGGACAGGGTGGAGCCAGAGGAAACTCTG 7291338 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || ||||| ||| || |||||| || | | ||||||||||||| || Sbjct 7291337 GTGGAGGTCCGTAGCGGCCCTGATGTAGAAATCGGTCTTTCGACTTGGGTATAGGGGTGA 7291278 Score = 78.8 bits (86), Expect = 4e-12 Identities = 95/128 (74%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||||||| | || | | |||||| | | ||||| ||||| | Sbjct 11114402 GAGTCGAGTTGCTTGGGAATGCAGCCCAAAGTAGATGGTAAACTCCATCTAAGGCTAATT 11114343 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| | ||| | | ||||| ||||||| |||||| | Sbjct 11114342 ACCTGCACGAGACCGATAG---TTATGTACCATAAGGGAAAGTTGAAAAGAACTTTG--A 11114288 Query 160 AGAGAGTT 167 |||||||| Sbjct 11114287 AGAGAGTT 11114280 Score = 78.8 bits (86), Expect = 4e-12 Identities = 95/128 (74%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||||||| | || | | |||||| | | ||||| ||||| | Sbjct 11619901 GAGTCGAGTTGCTTGGGAATGCAGCCCAAAGTAGATGGTAAACTCCATCTAAGGCTAATT 11619960 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| | ||| | | ||||| ||||||| |||||| | Sbjct 11619961 ACCTGCACGAGACCGATAG---TTATGTACCATAAGGGAAAGTTGAAAAGAACTTTG--A 11620015 Query 160 AGAGAGTT 167 |||||||| Sbjct 11620016 AGAGAGTT 11620023 Score = 78.8 bits (86), Expect = 4e-12 Identities = 95/128 (74%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||||||| | || | | |||||| | | ||||| ||||| | Sbjct 15531039 GAGTCGAGTTGCTTGGGAATGCAGCCCAAAGTAGATGGTAAACTCCATCTAAGGCTAATT 15530980 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| | ||| | | ||||| ||||||| |||||| | Sbjct 15530979 ACCTGCACGAGACCGATAG---TTATGTACCATAAGGGAAAGTTGAAAAGAACTTTG--A 15530925 Query 160 AGAGAGTT 167 |||||||| Sbjct 15530924 AGAGAGTT 15530917 Score = 78.8 bits (86), Expect = 4e-12 Identities = 95/128 (74%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||||||| | || | | |||||| | | ||||| ||||| | Sbjct 16019597 GAGTCGAGTTGCTTGGGAATGCAGCCCAAAGTAGATGGTAAACTCCATCTAAGGCTAATT 16019656 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| | ||| | | ||||| ||||||| |||||| | Sbjct 16019657 ACCTGCACGAGACCGATAG---TTATGTACCATAAGGGAAAGTTGAAAAGAACTTTG--A 16019711 Query 160 AGAGAGTT 167 |||||||| Sbjct 16019712 AGAGAGTT 16019719 >seq1024 Length=135753878 Score = 113 bits (124), Expect = 2e-22 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| | |||||| |||| ||||||||||||| | || ||| |||||| | | | ||| Sbjct 85655453 CTTCCAGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATTTAAG 85655512 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| ||||||||||| ||||||| || | ||||| ||||||| || Sbjct 85655513 GCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAAC 85655572 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| | |||| ||| || || ||||||| Sbjct 85655573 TTTGAAGAGAGCGTTCAAGAGGGCGTGAAA 85655602 >seq1824 Length=1396 Score = 109 bits (120), Expect = 2e-21 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| ||||| ||||||||| ||||| |||| |||||||||||||||||| Sbjct 1037 TGTTAGGACCTGAAAGGTGGTGAACTCTGCCTAGGCAGGGCAAAGCCAGAGGAAACTCTG 1096 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || ||| || ||| |||||||||| || || || ||||| | ||||||| Sbjct 1097 GTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTGTCGGGGCGA 1156 >seq1345 Length=61309027 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| ||||| ||||||||||||| Sbjct 25028641 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCGAGAGGAAACTCTG 25028582 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| ||||||||||| || || || ||||||||||||| Sbjct 25028581 GTGGGGGTCTGTAGTGGTCCTGACGTGCAAATCGGTCATCTGATCTGGGTATAGGGGC 25028524 >seq252 Length=181907262 Score = 84.2 bits (92), Expect = 9e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || |||||||||||| || |||| |||||| | | |||| ||||||| Sbjct 123487650 GAGTTGGGCTGCTTGGGAATGCAGACGAAAGTGGGTGGTAAACTCCATCTATGGCTAAAT 123487709 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| | | |||||| ||||||| |||| | | Sbjct 123487710 ACTGGCATGAGACCAATAGTCAACAAGTACCATAAGCGAAAGTTGAAAAGAACTTAGAAG 123487769 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 123487770 AGAGACTTCAAGAG 123487783 >seq208 Length=194502333 Score = 84.2 bits (92), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| || | |||||| ||||||||| |||||||| | | Sbjct 109927266 AAAGATGGTGAACTATGCCTGAGCAGAGGAAAGCCACAGGAAACTC-GGTGGAGGTTTGT 109927208 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 || ||| ||| ||||| |||| || || | |||||||| Sbjct 109927207 AGTGGTCCTGATGTGCAGATCGGTCATCTGACCTGGGTATA 109927167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079046568950