Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq4061 176 2e-42 seq1283 176 2e-42 seq1651 131 8e-29 seq1044 131 8e-29 seq1657 107 9e-22 seq252 107 9e-22 seq1447 100 1e-19 seq1434 100 1e-19 seq1345 93.3 2e-17 seq1481 91.5 7e-17 seq938 78.8 4e-13 >seq4061 Length=12628 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5363 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 5304 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||| |||||||||||| ||||||||| Sbjct 5303 CCGAATCCCCGCCCCGCGGCGGGGCGCGGGACGTGTGGCGTA 5262 >seq1283 Length=83181570 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 22051463 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCG 22051522 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 22051523 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 22051564 >seq1651 Length=26350515 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 2389461 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 2389402 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| ||| |||||| |||| |||||| ||| Sbjct 2389401 CTGAATCCTCCCCCTGCGCTGGGGCATGGGATATGTGGTGTA 2389360 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 2893898 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 2893957 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| ||| |||||| |||| |||||| ||| Sbjct 2893958 CTGAATCCTCCCCCTGCGCTGGGGCATGGGATATGTGGTGTA 2893999 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 11114623 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 11114564 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| || |||||| |||| |||||| ||| Sbjct 11114563 CTGAATCCTCCCCCTGCACTGGGGCATGGGATATGTGGTGTA 11114522 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 11619680 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 11619739 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| || |||||| |||| |||||| ||| Sbjct 11619740 CTGAATCCTCCCCCTGCACTGGGGCATGGGATATGTGGTGTA 11619781 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 15531260 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 15531201 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| || |||||| |||| |||||| ||| Sbjct 15531200 CTGAATCCTCCCCCTGCACTGGGGCATGGGATATGTGGTGTA 15531159 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 16019376 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 16019435 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| || |||||| |||| |||||| ||| Sbjct 16019436 CTGAATCCTCCCCCTGCACTGGGGCATGGGATATGTGGTGTA 16019477 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||| || |||||||||||||| |||||| | ||||||| |||||||||||||| | Sbjct 7292696 GGAAAAGAGACCAACCAGGATTCCCTTAGTAACAGTGAGTGAAGAGGGAAGAGCCCAGTG 7292637 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| ||| | ||||||| | |||| |||| || || Sbjct 7292636 CTGAATCCCTGCCTTGTGGTGGGGTGTGGGAAATGTTGCATA 7292595 >seq1044 Length=27883 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 6789 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGTGAGTGAACAGGGAAGAGCCCAGTG 6730 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||| | ||| ||| |||||| |||| |||||| ||| Sbjct 6729 CTGAATCCTCCCCCTGCGCTGGGGCATGGGATATGTGGTGTA 6688 >seq1657 Length=238541 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||| || |||||||||||||| |||||| | ||||||| |||||||||||||| | Sbjct 167284 GGAAAAGAGACCAACCAGGATTCCCTTAGTAACAGTGAGTGAAGAGGGAAGAGCCCAGTG 167343 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| ||| | ||||||| | |||| |||| || || Sbjct 167344 CTGAATCCCTGCCTTGTGGTGGGGTGTGGGAAATGTTGCATA 167385 >seq252 Length=181907262 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| ||||| ||| |||||||||||| || |||||||||||||||| ||||| Sbjct 123487428 GGAAAAGAAATTAACCTGGACTCCCTCAGTAACAGCAAGTGAACAGGGAAGAGTCCAGCA 123487487 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||| | || ||| || ||| ||||||| || Sbjct 123487488 TTGAATCCCTGCCCCACAGTAGGGTGCAGGAAATGTGGCATA 123487529 >seq1447 Length=236269 Score = 100 bits (110), Expect = 1e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 200294 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGTAAGAGCCCAGCA 200235 Query 61 CCGAATCCCCGCC 73 || ||| || ||| Sbjct 200234 CCAAATGCCTGCC 200222 Score = 100 bits (110), Expect = 1e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 222102 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGTAAGAGCCCAGCA 222043 Query 61 CCGAATCCCCGCC 73 || ||| || ||| Sbjct 222042 CCAAATGCCTGCC 222030 >seq1434 Length=37823149 Score = 100 bits (110), Expect = 1e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 7460185 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGTAAGAGCCCAGCA 7460244 Query 61 CCGAATCCCCGCC 73 || ||| || ||| Sbjct 7460245 CCAAATGCCTGCC 7460257 >seq1345 Length=61309027 Score = 93.3 bits (102), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||| | ||||||||||||| |||| ||||| || ||||||||| || ||||| ||| Sbjct 25029947 AAATGGAACTAACCAGGATGCCCTTAGTAAAGGTAAGTGAACAG---TGATCCCAGTGCC 25029891 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| ||||| ||||||| |||||| |||||||||| Sbjct 25029890 AAATCCCTGCCCCTTGGTGGGGTGCGGGAAATGTGGCGTA 25029851 >seq1481 Length=155549662 Score = 91.5 bits (100), Expect = 7e-17 Identities = 84/104 (81%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACT-AACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||| |||||||| ||| ||||||||||||||||| || |||||||| |||||||||||| Sbjct 48096295 GGAGAAGAAACTTAACAAGGATTCCCTCAGTAACAGCAAGTGAACATGGAAGAGCCCAGT 48096236 Query 60 GCCGAATCCCCGCCCCGCGGT-GGGGCGCGGGACATGTGGCGTA 102 || || | | ||||| | || |||| | ||| ||||||| || Sbjct 48096235 GCTAAACCTCTGCCCCACAGTGGGGGTGTTGGAAATGTGGCATA 48096192 >seq938 Length=135926727 Score = 78.8 bits (86), Expect = 4e-13 Identities = 80/103 (78%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTC-AGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| | |||||||| | ||| |||||||||| ||||||| || || Sbjct 33439676 GGAAAAGAAACTAACAAAAATTCCCTCTAATAATGGCGAGTGAATTGGGAAGAACCTAGT 33439617 Query 60 GCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||| |||| | ||| || | || | ||||| |||| Sbjct 33439616 GCTGAATCCTTGCCCAGTGGTCAGGAGTGGAAAATGTGACGTA 33439574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230303990160