Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4061 347 2e-93 seq1395 228 1e-57 seq148 217 3e-54 seq1657 214 3e-53 seq1651 214 3e-53 seq1345 179 6e-43 seq301 91.5 3e-16 seq1283 78.8 2e-12 seq208 78.8 2e-12 >seq4061 Length=12628 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 824 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 883 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 884 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 943 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 944 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1003 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1004 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1063 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 1064 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 1117 >seq1395 Length=66533130 Score = 228 bits (252), Expect = 1e-57 Identities = 184/221 (83%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACGGTCATCA-GTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | |||||||| | | || ||||| | |||||||||||||||||||||| Sbjct 31179722 CTGAGCAGGATTACCATGGCAACAACACACATCACGGAGGGTAAAACTAACCTGTCTCAC 31179781 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 || |||||||| ||||||||| | ||| ||||||||||||||||||||| |||| ||| Sbjct 31179782 GAAGGTCTAAATCCAGCTCACATGCCCCATTAGTGGGTGAACAATCCAATGCTTGGTGAA 31179841 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||| |||| |||||||||||| || ||||| ||||||||||||||||| || ||||| Sbjct 31179842 TTCTACTTCACAATGATAGGAAGAACCAACATCAAAGGATCAAAAAGCAACATCCCTATG 31179901 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||||||| | || ||||||||||||| |||||||||| Sbjct 31179902 AACGCTTGGCCACAACGAGCCAGTTATCCCCGTGGTAACTT 31179942 >seq148 Length=133216015 Score = 217 bits (240), Expect = 3e-54 Identities = 183/222 (82%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACGGTCATCA-GTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | |||||||| | | || ||||| | |||||||||||||||||||||| Sbjct 21890104 CTGAGCAGGATTACCATGGCAACAACACACATCACGGAGGGTAAAACTAACCTGTCTCAC 21890163 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||| |||||| ||||||||| | ||||||||||||||||||||||||| |||| ||| Sbjct 21890164 TACGATCTAAATCCAGCTCACATGCCCTATTAGTGGGTGAACAATCCAATGCTTGGTGAA 21890223 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||| |||| |||||||||||| || ||||| ||||||||||| |||| || ||||| Sbjct 21890224 TTCTACTTCACAATGATAGGAAGAACCAACATCACAGGATCAAAAAACAACATCCCTATG 21890283 Query 182 AACGCTTGGCTGCCACAAGCCAGTTAT-CCCTGTGGTAACTT 222 || ||||||| || || |||||||||| |||||||||||||| Sbjct 21890284 AATGCTTGGCCGCAACGAGCCAGTTATCCCCTGTGGTAACTT 21890325 >seq1657 Length=238541 Score = 214 bits (236), Expect = 3e-53 Identities = 158/184 (86%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||| ||| ||||||||||| ||||||||| | |||||||||| Sbjct 171317 AGGGTAAAACTAACCTGTTTCACGACGGTCTAAATCCAGCTCACATGCCCTATTAGT--- 171261 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 |||||||||||| ||| ||||||| | || ||||||||||||||| ||||| || Sbjct 171260 TGAACAATCCAATGCTGGGTGAATTCTACCTCACAATGATAGGAAGAGCCAACATCAAAT 171201 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||| Sbjct 171200 GATCAAAAAGCAACGTCTCTATGAACACTTGGCTGCAACAAGCCAGTTATCCCCATGGTA 171141 Query 219 ACTT 222 |||| Sbjct 171140 ACTT 171137 >seq1651 Length=26350515 Score = 214 bits (236), Expect = 3e-53 Identities = 158/184 (86%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||| ||| ||||||||||| ||||||||| | |||||||||| Sbjct 7288663 AGGGTAAAACTAACCTGTTTCACGACGGTCTAAATCCAGCTCACATGCCCTATTAGT--- 7288719 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 |||||||||||| ||| ||||||| | || ||||||||||||||| ||||| || Sbjct 7288720 TGAACAATCCAATGCTGGGTGAATTCTACCTCACAATGATAGGAAGAGCCAACATCAAAT 7288779 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||| Sbjct 7288780 GATCAAAAAGCAACGTCTCTATGAACACTTGGCTGCAACAAGCCAGTTATCCCCATGGTA 7288839 Query 219 ACTT 222 |||| Sbjct 7288840 ACTT 7288843 >seq1345 Length=61309027 Score = 179 bits (198), Expect = 6e-43 Identities = 143/170 (84%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||||||||||||||||||| || |||||||| |||||| ||||||| ||| |||||||| Sbjct 25026195 TAAAACTAACCTGTCTCATGCCGTTCTAAACCAAGCTCAGGTTCCCTGTTATTGGGTGAA 25026254 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 | ||||||||||| |||||||| ||| | ||||||||| || ||| | ||||||| Sbjct 25026255 CCATCCAACGCTTGGTGAATTCTGTTTC---ACAATAGGAAGATCCAACA-CAAAGGATC 25026310 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||| | |||||||||||| |||||| | ||||| ||||||||||| Sbjct 25026311 AAAAAGCGATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCT 25026360 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/84 (87%), Gaps = 5/84 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAA-AACTAACCTGTCTCAT-GACGGTCTAAAC-CCAGCTCACGTTCC 87 |||| |||||||||| ||||||||||||||| || |||||||| |||||||| |||| Sbjct 7036124 TCAT-AGTAGGGTAAGAACTAACCTGTCTCAGCGATCGTCTAAACACCAGCTCAACTTCC 7036066 Query 88 CTATTAGTGGGTGAACA-ATCCAA 110 |||||||||||||||| |||||| Sbjct 7036065 GTATTAGTGGGTGAACATATCCAA 7036042 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG-CTTCG 131 ||||||||| ||| || ||||||||||||| ||||| ||| |||||||| |||| Sbjct 45408543 CCCAGCTCAGGTTTTCTG--AGTGGGTGAACAACCCAAC-CTTGGTGAATTCTGTCTTCC 45408487 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||||||||| ||||| ||||||||||| Sbjct 45408486 A-ATGATAGGAAGAGCCCACATCCAAGGATCAAAA 45408453 >seq301 Length=175400573 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||||||||| |||||||||||| || |||||||| ||||||| |||| Sbjct 15161468 TAGGAAGAGCCAACATCGAAGCATCAAAAAGCAAGGTTGCTATGAATGCTTGGCAGCCAT 15161527 Query 198 AAGCCAGT 205 |||||||| Sbjct 15161528 AAGCCAGT 15161535 >seq1283 Length=83181570 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 63104320 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 63104265 >seq208 Length=194502333 Score = 78.8 bits (86), Expect = 2e-12 Identities = 148/220 (67%), Gaps = 17/220 (8%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| | ||| ||| | | |||| | ||||||| ||| || Sbjct 136972847 TCATCAGTAGGACAAAACTGTCTTGTATCACCATTGCCTAATCACAGCTCAAATTCT-TA 136972789 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| |||||||||||||| || |||| ||| |||||||| |||| Sbjct 136972788 TTAATGGGTGAACAATCCCACCCTTAGTGAAGTCTGCTTCACAATGAAGAACCAATATTT 136972729 Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 | | || || | ||| ||||| |||| || | | || ||||| ||| || | Sbjct 136972728 TACAACGGAGTGCTAATATCTAAGGACCAAACAGTGGCATTGCCATGAATACTTAGCCAC 136972669 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| || | ||| ||||| ||| ||||||| |||||| Sbjct 136972668 CACATTGCAATGATCTCTGTGATAAATTTTCTGACACCTC 136972629 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || | ||||||||||||||||||||||||||||| Sbjct 54622235 TACTGAGCAGGATTACCATGGCAACAACAGATCATCAGTAGGGTAAAACTAACCTGTCTC 54622294 Query 60 ATGACGGTCTAA 71 |||| || |||| Sbjct 54622295 ATGATGGCCTAA 54622306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854020227744