Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq4061 91.5 9e-17 seq1651 71.6 8e-11 seq1044 71.6 8e-11 >seq4061 Length=12628 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 7940 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 7997 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 7998 TAAT-CAACGCAAGCT 8012 >seq1651 Length=26350515 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 2391832 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 2391887 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 2391888 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 2391918 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 2891522 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 2891467 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 2891466 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 2891436 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 11117001 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 11117056 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 11117057 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 11117087 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 11617303 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 11617248 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 11617247 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 11617217 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 15533638 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 15533693 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 15533694 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 15533724 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 16016998 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 16016943 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 16016942 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 16016912 >seq1044 Length=27883 Score = 71.6 bits (78), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| | || || |||||||| |||| ||| ||||||| |||| ||| || |||| Sbjct 9167 GCCAATCC--AAGGTACTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGTGGTGTGT 9222 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||| ||||||| Sbjct 9223 GCAAAGGGCAGGGACTTAAT-CAATGCAAGCT 9253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300674653820