Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1395 91.5 2e-16 seq148 84.2 3e-14 seq4061 82.4 9e-14 seq1197 73.4 5e-11 >seq1395 Length=66533130 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/101 (81%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| |||| ||||||||| ||||||||| ||| |||| | || | Sbjct 31149321 AAACCAACAAAATAGAATCGCA-GTCCTATTCCATTATTCCAAGCTGCAGTATCCAGGTG 31149379 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 31149380 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 31149420 >seq148 Length=133216015 Score = 84.2 bits (92), Expect = 3e-14 Identities = 114/153 (75%), Gaps = 7/153 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || ||||||||| ||||||||| ||| |||| | |||| Sbjct 21865662 AAACCAACAAAATAGA-ACTGTGGTCCTATTCCATTATTCCAAGCTGCAGTATCCAGGCG 21865720 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCAC 126 | ||||||||| |||||||||||||| |||| ||||| | | | | || | | || Sbjct 21865721 GCTTGGGCCTGCTTTCAACACTCTAATTTTTTCAAAGTAAATG-CTTCGGGCCACAGGAC 21865779 Query 127 AC-CAATGAAG-GCATACGGGCTCACCAAGAGG 157 || || ||| |||| |||| |||| ||||| Sbjct 21865780 ACTCAGCTAAGAGCATCCGGGGGCACCGAGAGG 21865812 >seq4061 Length=12628 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8778 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8836 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8837 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8877 >seq1197 Length=81586097 Score = 73.4 bits (80), Expect = 5e-11 Identities = 80/100 (80%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||||| |||||||| || |||| |||||||| |||||||| ||| |||| | ||| Sbjct 34810686 AAACCAGCAAAATAGA-AC-CACGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGC 34810743 Query 69 G--TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105 | | | ||||||||||||||||||||||| |||| ||| Sbjct 34810744 GGCTCGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTA 34810783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594943707066