Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1395 100 3e-19 seq4061 96.9 4e-18 seq41800 89.7 5e-16 seq1651 89.7 5e-16 seq1403 87.8 2e-15 seq1197 84.2 2e-14 seq148 84.2 2e-14 seq38916 80.6 3e-13 >seq1395 Length=66533130 Score = 100 bits (110), Expect = 3e-19 Identities = 132/177 (75%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| | | | |||| | | | Sbjct 31149420 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCACCTGGATACTGCAGCTT 31149361 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| |||| ||||||||||| ||||| | ||| | | |||| Sbjct 31149360 GGAATAATGGAATAGGAC-TGCGATTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 31149303 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||||| | |||| || | | | ||||||||| |||||| Sbjct 31149302 TTAAGAGGGATGGCCGGGGGCATTCATATTGCACCTCT-AGAGGTGAAATGCTTGGA 31149247 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||| | || | |||| | | | Sbjct 30932474 TTTACTTTGAAAAAATTAGAGGGTTCAAAGCAGGTCCAAGCCGCCTGGATACCTCAGCTA 30932533 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| ||||||||| ||||||||||||| | ||||| || || | | |||| Sbjct 30932534 AGAATAATGGAATAGGAC-CGCGGTTCTATTTTCTGGGTTTTCAGAACTG-AGGCCATGA 30932591 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 30932592 TTAAGAGGGACGGGCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 30932647 >seq4061 Length=12628 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 8877 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 8818 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 8817 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 8760 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 8759 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 8704 >seq41800 Length=1327 Score = 89.7 bits (98), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 758 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 701 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| || ||||||||||||| ||||| | ||| | | |||| Sbjct 700 GGAATAATGGAATAGGAC-TGTGGTTCTATTTTGTTGGTTT-TCGGAAGGGAGGCCATGA 643 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 642 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 587 >seq1651 Length=26350515 Score = 89.7 bits (98), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 2392766 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 2392709 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| || ||||||||||||| ||||| | ||| | | |||| Sbjct 2392708 GGAATAATGGAATAGGAC-TGTGGTTCTATTTTGTTGGTTT-TCGGAAGGGAGGCCATGA 2392651 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 2392650 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 2392595 Score = 86.0 bits (94), Expect = 6e-15 Identities = 127/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 2890592 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 2890649 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||||| ||||| | ||| | | |||| Sbjct 2890650 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTT-TCGGAAGGGAGGCCATGA 2890707 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 2890708 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 2890763 Score = 86.0 bits (94), Expect = 6e-15 Identities = 127/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 11117931 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 11117874 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||||| ||||| | ||| | | |||| Sbjct 11117873 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTT-TCGGAAGGGAGGCCATGA 11117816 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 11117815 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 11117760 Score = 86.0 bits (94), Expect = 6e-15 Identities = 127/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 11616373 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 11616430 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||||| ||||| | ||| | | |||| Sbjct 11616431 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTT-TCGGAAGGGAGGCCATGA 11616488 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 11616489 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 11616544 Score = 80.6 bits (88), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 15534568 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 15534511 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||| | ||||| | ||| | | |||| Sbjct 15534510 GGAATAATGGAATAGGACC-GTGGTTCTATTTTCTTGGTTT-TCGGAAGGGAGGCCATGA 15534453 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 15534452 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 15534397 Score = 80.6 bits (88), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 16016068 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 16016125 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||| | ||||| | ||| | | |||| Sbjct 16016126 GGAATAATGGAATAGGACC-GTGGTTCTATTTTCTTGGTTT-TCGGAAGGGAGGCCATGA 16016183 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 16016184 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 16016239 Score = 77.0 bits (84), Expect = 3e-12 Identities = 128/179 (72%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGA-ATACATTACCAT 69 |||||||||||||| |||||| |||||||||||||| || | | ||| | | | Sbjct 15301350 TTTACTTTGAAAAAGTTAGAGTGTTCAAAGCAGGCCCGAGCCACCTAGATATCTCAGCTA 15301409 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| || |||||| || | ||||||| |||||| ||||| ||||| | | |||| Sbjct 15301410 GGAATGATGGAATAGAACCT-CGGTTCTTTTTTGTTGGTTTTCAGGACTG-AGGCCATGA 15301467 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | ||||| | ||||| | | | | |||||||||||||||| Sbjct 15301468 TTAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 15301523 Score = 77.0 bits (84), Expect = 3e-12 Identities = 128/179 (72%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGA-ATACATTACCAT 69 |||||||||||||| |||||| |||||||||||||| || | | ||| | | | Sbjct 16233168 TTTACTTTGAAAAAGTTAGAGTGTTCAAAGCAGGCCCGAGCCACCTAGATATCTCAGCTA 16233109 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| || |||||| || | ||||||| |||||| ||||| ||||| | | |||| Sbjct 16233108 GGAATGATGGAATAGAACCT-CGGTTCTTTTTTGTTGGTTTTCAGGACTG-AGGCCATGA 16233051 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | ||||| | ||||| | | | | |||||||||||||||| Sbjct 16233050 TTAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 16232995 Score = 77.0 bits (84), Expect = 3e-12 Identities = 128/179 (72%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGA-ATACATTACCAT 69 |||||||||||||| |||||| |||||||||||||| || | | ||| | | | Sbjct 16266423 TTTACTTTGAAAAAGTTAGAGTGTTCAAAGCAGGCCCGAGCCACCTAGATATCTCAGCTA 16266364 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| || |||||| || | ||||||| |||||| ||||| ||||| | | |||| Sbjct 16266363 GGAATGATGGAATAGAACCT-CGGTTCTTTTTTGTTGGTTTTCAGGACTG-AGGCCATGA 16266306 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | ||||| | ||||| | | | | |||||||||||||||| Sbjct 16266305 TTAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGA 16266250 >seq1403 Length=321896 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||| | || | |||| | | | Sbjct 296761 TTTACTTTGAAAAAATTAGAGGGTTCAAAGCAGGTCCAAGCCGCCTGGATACCTCAGCTA 296820 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| ||||||||| ||||||||||||| | ||||| || || | | |||| Sbjct 296821 AGAATAATGGAATAGGAC-CGCGGTTCTATTTTCTGGGTTTTCAGAACTG-AGGCCATGA 296878 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 296879 TTAAGAGGGACGGGCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 296934 >seq1197 Length=81586097 Score = 84.2 bits (92), Expect = 2e-14 Identities = 125/174 (72%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| |||||||||||| | || | |||| | | || Sbjct 34810783 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGTCCGAGCCGCCTGGATACCGCAGCTAGG 34810724 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||| ||||| | ||| | | ||||| Sbjct 34810723 AATAATGGAATAGGAC-CGTGGTTCTATTTTGCTGGTTT-TCGGAACTGAGGCCATGATT 34810666 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || ||||| | ||||| | | | |||||||||||||||| Sbjct 34810665 AAGAGGGACAGCTGGGGGCATTTGTATTGCACCGCTAGAGGTGAAATTCTTGGA 34810612 >seq148 Length=133216015 Score = 84.2 bits (92), Expect = 2e-14 Identities = 126/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||| |||||||||| || | |||| | | | Sbjct 21865761 TTTACTTTGAAAAAATTAGAGTGTTGAAAGCAGGCCCAAGCCGCCTGGATACTGCAGCTT 21865702 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | |||||||||||| ||||| | ||| | | |||| Sbjct 21865701 GGAATAATGGAATAGGAC-CACAGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 21865644 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | ||||| | |||| | | | |||||||||||||||| Sbjct 21865643 TTAAGAGGGACGGCTGGGGGCATTCATATTGCACCGCTAGAGGTGAAATTCTTGGA 21865588 >seq38916 Length=1083 Score = 80.6 bits (88), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 || |||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 570 TTAACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCTGAGCCACCTGGATACCACAGCTA 627 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||| | ||||| | ||| | | |||| Sbjct 628 GGAATAATGGAATAGGACC-GTGGTTCTATTTTCTTGGTTT-TCGGAAGGGAGGCCATGA 685 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| || ||||| | | |||||||||||||||| Sbjct 686 TTAAGAGGGATGGCTGGGGGCGTTTGTATTGCCCCGCTAGAGGTGAAATTCTTGGA 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511779532960