Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4061 104 4e-20 seq1657 87.8 3e-15 seq1651 87.8 3e-15 seq1056 82.4 1e-13 seq13934 80.6 4e-13 seq2630 80.6 4e-13 seq401 80.6 4e-13 seq1283 75.2 2e-11 seq1409 73.4 6e-11 >seq4061 Length=12628 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 826 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 769 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 768 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 715 >seq1657 Length=238541 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | |||||| | ||||| | || | ||| |||| | || | Sbjct 151815 GTATGAGAGGAACCAAAGG-TTCAGAC-ATTTGGTGTATGTGCCTGGCTGAGGAACCAAT 151872 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || ||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 151873 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 151930 >seq1651 Length=26350515 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | |||||| | ||||| | || | ||| |||| | || | Sbjct 7308153 GTATGAGAGGAACCAAAGG-TTCAGAC-ATTTGGTGTATGTGCCTGGCTGAGGAACCAAT 7308096 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || ||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 7308095 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 7308038 >seq1056 Length=137163284 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 130741891 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 130741832 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 130741831 GTCAGAATCC 130741822 >seq13934 Length=1082 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| | || || |||||||||||||||| |||||||| Sbjct 481 TTGGTGTATGTGCTTGGCTGAGGAACCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 540 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 541 CTGAACGCCTCTAAGTCAGAATCC 564 >seq2630 Length=10708 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| | || || |||||||||||||||| |||||||| Sbjct 6804 TTGGTGTATGTGCTTGGCTGAGGAACCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 6863 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 6864 CTGAACGCCTCTAAGTCAGAATCC 6887 >seq401 Length=166211670 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| | || || |||||||||||||||| |||||||| Sbjct 164528057 TTGGTGTATGTGCTTGGCTGAGGAACCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 164528116 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 164528117 CTGAACGCCTCTAAGTCAGAATCC 164528140 >seq1283 Length=83181570 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||| ||||||||||||| Sbjct 76760231 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTTTAAGTCAGAATCC 76760181 >seq1409 Length=33445071 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| | ||||| | || || |||| || || | Sbjct 497573 GTAGGAGAGGAACCCCAGG-TTCAGAC-ATTTGGTGTATGTCCTTGGCTGAGGAGCCAAT 497516 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||| || |||||||| ||||||| |||||||||||||||| Sbjct 497515 GGGGTAAAGCTACCATATGTGGGATTATGACTGAACGACTCTAAGTCAGAATCC 497462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818847252736