Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1588 226 2e-54 seq1481 226 2e-54 seq1024 107 2e-18 seq793 98.7 8e-16 seq106 82.4 6e-11 >seq1588 Length=553333 Score = 226 bits (250), Expect = 2e-54 Identities = 596/895 (67%), Gaps = 25/895 (3%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| | || || || | |||||| ||||||| | ||||| |||| ||||| || Sbjct 229667 AACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAG 229726 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 |||||||| |||||||||||||| |||||||| || ||||||| ||||| || Sbjct 229727 AAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCAC 229786 Query 61165 TGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| | | | | || || | |||| || ||||| ||| ||||||| Sbjct 229787 TGGGAATCCCCGAAGCCCGAGGAGAG--ATATTTTATATCCCATGTTCTGGTTTTCTTTG 229844 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAA 61281 | || || || || || ||||| ||||| |||| || ||| || | || | || Sbjct 229845 CAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTT-CAG 229903 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || || |||||||| |||||||| ||||||||||| || | || || || Sbjct 229904 ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 229963 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 ||||| ||| | || || || || ||||||| || | ||| ||| | ||| Sbjct 229964 ATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTC 230023 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 |||||||| || ||||| || || ||| ||| || ||||||||||| ||||| Sbjct 230024 AATGCCATTGA-ACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGAT- 230081 Query 61462 ACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | |||| |||||| | ||||||||| | | || || || | || || || Sbjct 230082 -TGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCA 230140 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || || ||| || ||||| | || || ||| | |||||||| |||| ||||| | Sbjct 230141 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTG 230200 Query 61580 GTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || || || ||||| | || || || | || ||||| | || |||||||||||| Sbjct 230201 GCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCT 230259 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 ||| | ||||||| | ||||| | || ||||||||| ||| | || || Sbjct 230260 TGCTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGTGAGAGAAATA 230316 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || | || || || ||||| ||||| || || || || ||||| || ||| Sbjct 230317 ATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTC 230376 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || || |||||||| |||||| ||| || ||||| ||||| || ||| | || || Sbjct 230377 ATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATG 230436 Query 61819 GTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | || ||||| | ||| || | | | | | | ||||||||| || | ||| | Sbjct 230437 CTGGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGACTTTACGGAGA 230494 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || | ||||| || || || |||| | |||||||| ||||| Sbjct 230495 ATATTTCACT-----GAAAGACTAACTTCTTTGAGAGGGGAGTAGGCGAGTATCA 230544 >seq1481 Length=155549662 Score = 226 bits (250), Expect = 2e-54 Identities = 596/895 (67%), Gaps = 25/895 (3%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| | || || || | |||||| ||||||| | ||||| |||| ||||| || Sbjct 44509266 AACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAG 44509207 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 |||||||| |||||||||||||| |||||||| || ||||||| ||||| || Sbjct 44509206 AAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCAC 44509147 Query 61165 TGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| | | | | || || | |||| || ||||| ||| ||||||| Sbjct 44509146 TGGGAATCCCCGAAGCCCGAGGAGAG--ATATTTTATATCCCATGTTCTGGTTTTCTTTG 44509089 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAA 61281 | || || || || || ||||| ||||| |||| || ||| || | || | || Sbjct 44509088 CAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTT-CAG 44509030 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || || |||||||| |||||||| ||||||||||| || | || || || Sbjct 44509029 ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 44508970 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 ||||| ||| | || || || || ||||||| || | ||| ||| | ||| Sbjct 44508969 ATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTC 44508910 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 |||||||| || ||||| || || ||| ||| || ||||||||||| ||||| Sbjct 44508909 AATGCCATTGA-ACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGAT- 44508852 Query 61462 ACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | |||| |||||| | ||||||||| | | || || || | || || || Sbjct 44508851 -TGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCA 44508793 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || || ||| || ||||| | || || ||| | |||||||| |||| ||||| | Sbjct 44508792 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTG 44508733 Query 61580 GTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || || || ||||| | || || || | || ||||| | || |||||||||||| Sbjct 44508732 GCCTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCT 44508674 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 ||| | ||||||| | ||||| | || ||||||||| ||| | || || Sbjct 44508673 TGCTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGTGAGAGAAATA 44508617 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || | || || || ||||| ||||| || || || || ||||| || ||| Sbjct 44508616 ATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTC 44508557 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || || |||||||| |||||| ||| || ||||| ||||| || ||| | || || Sbjct 44508556 ATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATG 44508497 Query 61819 GTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | || ||||| | ||| || | | | | | | ||||||||| || | ||| | Sbjct 44508496 CTGGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGACTTTACGGAGA 44508439 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || | ||||| || || || |||| | |||||||| ||||| Sbjct 44508438 ATATTTCACT-----GAAAGACTAACTTCTTTGAGAGGGGAGTAGGCGAGTATCA 44508389 >seq1024 Length=135753878 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 4037753 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 4037694 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 4037693 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCCGTCTG 4037634 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 4037633 AGACTCAATGATGGCATACCAAAG 4037610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || || || ||||||| || || || Sbjct 4041587 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCATAATAAATAGTTTCAAAG 4041528 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 4041527 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 4041468 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 4041467 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 4041424 >seq793 Length=147911612 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 104146843 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 104146784 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 104146783 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 104146737 >seq106 Length=111504155 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 10255036 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 10255095 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || ||||| || |||||||||||||| | |||||||| Sbjct 10255096 ATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGT 10255150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397352628593360