Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq8533 87.8 1e-15 seq7918 84.2 1e-14 seq55697 80.6 1e-13 seq29039 77.0 2e-12 seq53092 71.6 8e-11 >seq8533 Length=23919 Score = 87.8 bits (96), Expect = 1e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| |||||| ||| |||| || |||||| |||| | ||| Sbjct 10273 AACCCAAAGACTTTGGTTTCTCAGAAGTTGCCCAGTGAGTCATGGAAATAATGTTGCCAC 10332 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | | ||||||| ||||| ||| | ||||||||||||||||||| |||| || Sbjct 10333 ATTGCCAATCGGCATCGTTTATGGTCCAAACTACGACGGTATCTGATCATCTTAGA 10388 >seq7918 Length=135000294 Score = 84.2 bits (92), Expect = 1e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 3047238 AACCCAAAGACTTTGGTTTCTTGGAAACTGCCCAGCGGGTCATGGAAATAACCCCGCCGC 3047179 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||| | ||| ||||| |||| ||| ||||||||||||||||||| ||||| Sbjct 3047178 ATCACCAGTTGGCATCATTTATGGTCGGAACTACGACGGTATCTGATCATCTTC 3047125 >seq55697 Length=6314 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||||| ||| |||| || | |||| |||| | ||| Sbjct 5751 GAACCCAAAGACTTTGGTTTCTCAGAAGTTGCCCAGTGGGTCATGGAAATAATGTTGCCA 5692 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | | ||||||| ||||| ||| | ||||| ||||||||||||| |||| || Sbjct 5691 CATTGCCAATCGGCATCGTTTATGGTCCAAACTACAACGGTATCTGATCATCTTAGA 5635 >seq29039 Length=137941 Score = 77.0 bits (84), Expect = 2e-12 Identities = 90/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCGC 58 ||||||||||||||| ||||| | ||| |||| || | |||| |||| || | | || Sbjct 35012 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGTGGGTCATGGAAAT--TACCCT-GC 34956 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| | ||||||||| |||| |||| |||| || ||| ||||||| ||||||| Sbjct 34955 CACATCACCAGTCGGCATCATTTATGGTTGGAACTATGATGGTGTCTGATCATCTTCGA 34897 Score = 75.2 bits (82), Expect = 6e-12 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| || | |||| ||||| ||| Sbjct 32860 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGTGGGTCATGGAAATAACCCTGCCAC 32801 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||| |||| |||| |||| |||| || ||| ||||||| ||||||| Sbjct 32800 ATCACCAGTCAGCATCATTTATGGTTGGAACTATGATGGTGTCTGATCATCTTCGA 32745 >seq53092 Length=393436 Score = 71.6 bits (78), Expect = 8e-11 Identities = 86/116 (74%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||| | || || | ||| |||| || | |||| ||||| ||| Sbjct 107498 AACCCAAAGACT--GGTTCCTTGGAAGCTGCCCAGTGGGTCATGGAAATAACGCCGCTGC 107555 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| |||| |||| ||||||||| |||||||||||||| || Sbjct 107556 ATCACCAGTCGGCATCATTTATGGTTGGAACTACGACGCTATCTGATCGTCTTGGA 107611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278239393650