Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq8175 134 6e-30 seq17816 107 9e-22 seq50891 105 3e-21 seq51122 95.1 6e-18 >seq8175 Length=11768 Score = 134 bits (148), Expect = 6e-30 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 7937 GGAAAAGAGACTAACCAGGATTCCCTCAGTAACGGTGAGTGAAGAGGGAAGAGCCCAGCG 7878 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || ||||||||||| | ||||||| || ||| |||| | ||| Sbjct 7877 CCAAATCCCCGCCCTGTGGTGGGGTGCAGGAAATGTTGTGTA 7836 >seq17816 Length=183952662 Score = 107 bits (118), Expect = 9e-22 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||| ||||| ||| |||||||||||| || |||||||||||||||||||||| Sbjct 124962448 AAAAGAAATTAACCTGGACTCCCTCAGTAACAGCAAGTGAACAGGGAAGAGCCCAGCATT 124962507 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 ||||||| ||||| | | ||| |||||| ||||||| Sbjct 124962508 GAATCCCTGCCCCACAGAAGGGTGCGGGAAATGTGGC 124962544 >seq50891 Length=609256 Score = 105 bits (116), Expect = 3e-21 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 326452 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGTAAGAGCCCAGCA 326511 Query 61 CCGAATCCCCGCC 73 || |||||| ||| Sbjct 326512 CCAAATCCCTGCC 326524 >seq51122 Length=156195299 Score = 95.1 bits (104), Expect = 6e-18 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACT-AACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||| |||||||| ||| ||||||||||||||||| || |||||||| |||||||||||| Sbjct 48692649 GGAGAAGAAACTTAACAAGGATTCCCTCAGTAACAGCAAGTGAACATGGAAGAGCCCAGT 48692590 Query 60 GCCGAATCCCCGCCCCGCGGT-GGGGCGCGGGACATGTGGCGTA 102 || || | | ||||| | || |||| || ||| ||||||| || Sbjct 48692589 GCTAAACCTCTGCCCCACAGTGGGGGTGCTGGAAATGTGGCATA 48692546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230267084400