Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8299 223 6e-56 seq8175 223 6e-56 seq47930 176 8e-42 seq51122 114 2e-23 seq48178 107 3e-21 seq20726 87.8 3e-15 seq13964 82.4 1e-13 seq45237 78.8 2e-12 >seq8299 Length=20522 Score = 223 bits (246), Expect = 6e-56 Identities = 162/186 (87%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 4418 TAGGGTAAAACTAACCTGTCTCATGATGGTCTAAATCCAGCTCACGTGCCCTATTAGT-- 4475 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 |||||||||||| ||| ||||||| |||| ||||||||||||||| ||||| || Sbjct 4476 -TGAACAATCCAATGCTGGGTGAATTCTACTTCACAATGATAGGAAGAGCCAACATCAAA 4534 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT-CCCTGTGG 216 ||||||||||||| |||| ||| |||| |||||| || ||||||||||||| |||||||| Sbjct 4535 GGATCAAAAAGCAGCGTCCCTAAGAACACTTGGCCGCAACAAGCCAGTTATCCCCTGTGG 4594 Query 217 TAACTT 222 |||||| Sbjct 4595 TAACTT 4600 >seq8175 Length=11768 Score = 223 bits (246), Expect = 6e-56 Identities = 167/193 (87%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 32 CATCA-GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| | ||||| Sbjct 3033 CATCACGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAATCCAGCTCACATGCCCTA 3092 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| |||||||||||| ||| ||||||| |||| ||||||||||||||| | Sbjct 3093 TTAGT---TGAACAATCCAATGCTGGGTGAATTCTACTTCACAATGATAGGAAGAGCCAA 3149 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT-C 209 |||| ||||||||||||||| |||| ||| |||| |||||| || ||||||||||||| | Sbjct 3150 CATCAAAGGATCAAAAAGCAGCGTCCCTAAGAACACTTGGCCGCAACAAGCCAGTTATCC 3209 Query 210 CCTGTGGTAACTT 222 ||||||||||||| Sbjct 3210 CCTGTGGTAACTT 3222 >seq47930 Length=60714840 Score = 176 bits (194), Expect = 8e-42 Identities = 142/171 (83%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||| ||||||||||||||| |||||||| |||||| ||||||| ||| ||||||| Sbjct 24142523 GTAAAACCGACCTGTCTCATGACGTTCTAAACCAAGCTCAGGTTCCCTGTTATTGGGTGA 24142582 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || ||||||||||| |||||||| ||| | ||||||||| || ||| | |||||| Sbjct 24142583 ACCATCCAACGCTTGGTGAATTCTGTTTC---ACCATAGGAAGATCCAACACCAAAGGAT 24142639 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||| | |||||||||||| |||||| | ||||| ||||||||||| Sbjct 24142640 GAAAAAGCGATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCT 24142690 Score = 122 bits (134), Expect = 1e-25 Identities = 151/204 (74%), Gaps = 11/204 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||| | | ||||||||| |||||||||| |||||| |||| || Sbjct 42783870 TCATCACCAGGGTAAACCCAGCCTGTCTCACCT-GGTCTAAACC-AGCTCAGGTTCTCTG 42783927 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| ||||||||| | |||||||| || |||| | |||| | | Sbjct 42783928 --AGTGGCTGAACAATCATAGA-------AATTCTGCCTCACAATGAAAAAAAGAATCCA 42783978 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| || |||| ||||| | | | || | |||||||||| |||||||||||| || || Sbjct 42783979 CATAGAGGGATGAAAAATCGAGGGCGTTGTGAACGCTTGCTGGCCACAAGCCAGCTAGCC 42784038 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||||||||| |||||| |||||| Sbjct 42784039 CTGTGGTAACATTTCTGACACCTC 42784062 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG-CTTCG 131 ||||||||| ||| || ||||||||||||| ||||| ||| |||||||| |||| Sbjct 44641690 CCCAGCTCAGGTTTTCTG--AGTGGGTGAACAACCCAAC-CTTGGTGAATTCTGTCTTCC 44641634 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||||||||| ||||| ||||||||||| Sbjct 44641633 A-ATGATAGGAAGAGCCCACATCCAAGGATCAAAA 44641600 >seq51122 Length=156195299 Score = 114 bits (126), Expect = 2e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||| Sbjct 69015273 AATTCTGCTTCACAATGATAGGAAGAGCCGACACTGAAGGATCAAAAAGCCACGTTGCTA 69015332 Query 180 TGAACGCTTGGCTGCCACAAGCC 202 ||||| ||||||||||||||||| Sbjct 69015333 TGAACTCTTGGCTGCCACAAGCC 69015355 >seq48178 Length=4046 Score = 107 bits (118), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||| ||| | | ||||||||| |||||||||| |||||| |||| || Sbjct 3554 TCATCACCAGGGAAAACCCAGCCTGTCTCACCT-GGTCTAAACC-AGCTCAGGTTCTCTG 3497 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| ||||||||| | |||||||| || |||| | |||| | | Sbjct 3496 --AGTGGCTGAACAATCATAGA-------AATTCTGCCTCACAATGAAAAAAAGAATCCA 3446 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | | || |||| ||||| | | | || | |||||||||| |||||||||||| || || Sbjct 3445 CGTAGAGGGATGAAAAATCGAGGGCGTTGTGAACGCTTGCTGGCCACAAGCCAGCTAGCC 3386 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||| |||||| |||||| Sbjct 3385 TTGTGGTAACATTTCTGACACCTC 3362 >seq20726 Length=174210431 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||||||||| |||||||||||| || |||||||| |||||| |||| Sbjct 15598428 TAGGAAGAGCCAACATCGAAGCATCAAAAAGCAAGGTTGCTATGAATTCTTGGCAGCCAT 15598487 Query 198 AAGCCAGT 205 |||||||| Sbjct 15598488 AAGCCAGT 15598495 >seq13964 Length=198332218 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| ||| | | |||| | |||||||| ||| || Sbjct 138987468 TCATCAGTAGGACAAAACTGTCCTGTATCACCATTGCCTAATCACAGCTCACATTCT-TA 138987410 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| |||||||||||||| || |||| ||| |||||||| Sbjct 138987409 TTAATGGGTGAACAATCCCACCCTTAGTGAAGTCTGCTTC 138987370 >seq45237 Length=73212453 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 53329355 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 53329300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853874244960