Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq57721 87.8 2e-15 seq51751 87.8 2e-15 seq51255 87.8 2e-15 seq43713 87.8 2e-15 seq53092 84.2 2e-14 seq57358 78.8 1e-12 >seq57721 Length=27209 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| ||||||||||||| || | |||| | | Sbjct 913 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCCAAGCAGCCTGGATACCGCAGCTA 972 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| |||||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 973 GGAATGATAGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 1030 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1031 TTAAGAGGGATGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1086 >seq51751 Length=4045 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| ||||||||||||| ||| | |||| | | Sbjct 3854 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCCGAGCTGCCTGGATACCGCAGCTA 3913 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| |||||||||||| |||||||||||||| ||||| | ||| | | |||| Sbjct 3914 GGAATGATAGAATAGGAC-CACGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 3971 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||||| | ||||| | | |||||||||||||||| Sbjct 3972 TTAAGAGGGATGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 4027 >seq51255 Length=10240 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| ||||||||||||| ||| | |||| | | Sbjct 8916 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCCGAGCTGCCTGGATACCGCAGCTA 8975 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| |||||||||||| |||||||||||||| ||||| | ||| | | |||| Sbjct 8976 GGAATGATAGAATAGGAC-CACGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 9033 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||||| | ||||| | | |||||||||||||||| Sbjct 9034 TTAAGAGGGATGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 9089 >seq43713 Length=77800216 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| |||||||||||||| || | |||| | Sbjct 30327455 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCTGAGCCGCCTGGATACCGAGGCTA 30327514 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| |||||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 30327515 GGAATGATAGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 30327572 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||||| | ||||| | | |||||||||||||||| Sbjct 30327573 TTAAGAGGGATGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 30327628 >seq53092 Length=393436 Score = 84.2 bits (92), Expect = 2e-14 Identities = 126/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| |||||||||||||| || | |||| | | Sbjct 107858 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCTGAGCCGCCTGGATACCACAGCTA 107799 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| | | |||||||| |||||||||||||||| ||||| | ||| | | |||| Sbjct 107798 GGAATGACAAAATAGGAC-TGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 107741 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 107740 TTAAGAGGGACGGCCGGGGGCATTTGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 107685 >seq57358 Length=53825 Score = 78.8 bits (86), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||||||| ||||| |||||| ||||||||||||| || | |||| | | Sbjct 10868 TTTACTTTCAAAAAGTTAGAGTTTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 10927 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||| |||||||||||| ||||||||||||||| |||| | ||| | | |||| Sbjct 10928 GGAATGATAGAATAGGAC-AGCGGTTCTATTTTGTTAGTTT-TTGGAACTGAGGCCATGA 10985 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | |||| | | | |||||||||||||||| Sbjct 10986 TTAAGAGGGACGGCCGGGGGCATTCTTATTGCACCGCTAGAGGTGAAATTCTTGGA 11041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511694786400