Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq51122 253 2e-62 seq36523 107 2e-18 seq25851 98.7 8e-16 seq5641 82.4 6e-11 >seq51122 Length=156195299 Score = 253 bits (280), Expect = 2e-62 Identities = 595/887 (67%), Gaps = 22/887 (2%) Strand=Plus/Minus Query 61052 GTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 |||| || || | |||||||||||||| | ||||| |||| ||||| || ||||||| Sbjct 44960062 GTCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGG 44960003 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG- 61170 | |||||||||||||| ||| ||||| || ||||||| ||||| ||||||| Sbjct 44960002 AGGCTTCCTTCTGGACCACGGAAGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAAT 44959943 Query 61171 -CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTC 61229 | | | | | || || | |||| || ||||| ||| |||||||| || Sbjct 44959942 CCCTGAAGCCCGAGGAGAG--AGATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAG 44959885 Query 61230 GGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || || || || ||||| ||||| |||| || || || || || | | || Sbjct 44959884 TGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGTCAAATAGTTCAGATTACAGA 44959825 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 || || |||||||| |||||||| ||||||||||| || | || || || ||||| || Sbjct 44959824 AGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAG 44959765 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | | || || || || ||||||| || | ||| | ||| | ||||||||||| Sbjct 44959764 TCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAGGGAATTTATCTTCAATGCCAT 44959705 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469 || ||||| || || ||| ||| || ||||||||||| ||||| | || Sbjct 44959704 TGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGAT--TGGGGAC 44959647 Query 61470 AA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||||| | ||||||||| | | || || || | || || || || || || Sbjct 44959646 AAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCGTCTTCTTT 44959587 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || ||||| | || || ||| | |||||||| |||| ||||| || || || Sbjct 44959586 TCCGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACG 44959527 Query 61588 TTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 || ||||| | || || || | || ||||| | || |||||||||||| ||| | Sbjct 44959526 TTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGAT 44959468 Query 61647 ATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGA 61706 ||||||| | ||||| | | ||||||||| | ||| | || || || | Sbjct 44959467 GTTCAAAC---ACCTGGTACACAAAACATCGGAGGAGAGAGTGAGAGAAATAATTATCAA 44959411 Query 61707 GGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCAT 61766 || || || ||||||||||| || || || || ||||| || ||||| || || Sbjct 44959410 TGCTGTTCAGATAGAACAGGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGAT 44959351 Query 61767 GAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTT 61826 |||||| | |||||| ||| || ||||| ||||| || ||| | || || | || | Sbjct 44959350 GAATTGCGCTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACT 44959291 Query 61827 GGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 |||| | ||| || | | | | | | ||||||||| || ||||| | ||||| Sbjct 44959290 GGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGACTTTATGGAGAATATTTCA 44959233 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | ||||| || || || |||| | |||||||| ||||| Sbjct 44959232 CT-----GAAAGACTAACTTCTTTGAGAGGAGAGTAGGCGAGTATCA 44959191 >seq36523 Length=132107971 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 66621921 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 66621980 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 66621981 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTCTG 66622040 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 66622041 AGACTCAATGATGGCATACCAAAG 66622064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 66617896 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCGCCATAATAAATAGTTTCAAAG 66617955 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 66617956 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 66618015 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 66618016 GCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGCG 66618059 >seq25851 Length=153482349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 108803369 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATAGAGAAT 108803310 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 108803309 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 108803263 >seq5641 Length=113028656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 102566623 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 102566564 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || ||||| || |||||||||||||| | |||||||| Sbjct 102566563 ATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGT 102566509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397269840772400