Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq19685 322 8e-86 seq15374 291 1e-76 seq5891 113 8e-23 seq16085 87.8 3e-15 seq3002 87.8 3e-15 seq18762 84.2 4e-14 seq5669 82.4 1e-13 >seq19685 Length=598646 Score = 322 bits (356), Expect = 8e-86 Identities = 213/235 (91%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 381417 TACTGAGCAGGATTACCATGGCAACGACACCTCATCAGTAGGGTAAAACTAACCTGTCTC 381476 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 381477 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 381536 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 381537 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTGACGTCGCTA 381596 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 381597 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTCTCTGACACCTC 381651 >seq15374 Length=4994092 Score = 291 bits (322), Expect = 1e-76 Identities = 215/251 (86%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3619091 GTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 3619032 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| Sbjct 3619031 ACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGATATCGAAGGAT 3618972 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||||||| ||||| |||||||| |||||| ||||||||||||||||||| |||| |||| Sbjct 3618971 CAAAAAGTGACGTCACTATGAACACTTGGCCGCCACAAGCCAGTTATCCCCGTGGCAACT 3618912 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| |||||| || | ||| | || | |||||||| ||||| |||||| Sbjct 3618911 TTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGGGAGGCCCTGCTTTCA 3618852 Query 282 TGGTTTGTATT 292 ||| |||||| Sbjct 3618851 CGGTCTGTATT 3618841 >seq5891 Length=7406230 Score = 113 bits (124), Expect = 8e-23 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| | | |||||||||| |||||||||||||||||||| |||||||| Sbjct 7237199 GAATTCTGCTTCACAACGGTAGGAAGAGCTGACATCGAAGGATCAAAAAGTGACGTCGCT 7237140 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||| |||||| ||||||||||||| Sbjct 7237139 ATGAACTCTTGGCCGCCACAAGCCAGT 7237113 >seq16085 Length=2194486 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||||| || ||||||||| |||||| ||||||||||||||| |||||||| || Sbjct 384696 TCAAAAAGCAATGTTGCTATGAACACTTGGCCACCACAAGCCAGTTATTCCTGTGGTGAC 384637 Query 221 TTTTCT 226 |||||| Sbjct 384636 TTTTCT 384631 >seq3002 Length=7783076 Score = 87.8 bits (96), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||| |||||||||| |||||||||| |||||||||||| | |||||||||||| Sbjct 3144204 ACCTGTCTCACGACGGTCTAATCCCAGCTCACATTCCCTATTAGTAGATGAACAATCCAA 3144145 Query 111 C 111 | Sbjct 3144144 C 3144144 >seq18762 Length=10838250 Score = 84.2 bits (92), Expect = 4e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||||||| || | | |||| |||| | ||| ||||||||| |||| || Sbjct 7376965 GGTGAACAATCCAAGGCCTGGGGGATTC-GCTTTGCAGGGATGGGAAGAGCCAACATTGA 7376907 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||||||| | ||| | || | |||||| |||||||| |||||||||| Sbjct 7376906 AGGATCACAGGGCAGCATCACCATGAACCCTTGGCTGTCACAAGCCAG 7376859 >seq5669 Length=2999205 Score = 82.4 bits (90), Expect = 1e-13 Identities = 140/202 (69%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| ||||||||| ||||| ||| | | |||| |||||||||| ||| || Sbjct 671092 TCATTAGTAGAGTAAAACTATCCTGTATCACAATTGCCTAATCCCAGCTCACATTCT-TA 671034 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| ||||||||| ||| || |||| ||| |||| ||||| | Sbjct 671033 TTATTGGGTTCACAATCCAATACTTGGTAAAGTCTGTTTCACAATGA-----AGAGCTAA 670979 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| ||| ||| | ||| |||| |||| | ||||| ||| Sbjct 670978 CATCTGAGGACCAAGAAGTGGAATTGCTGTGAAACTTTGGTCACTGTGCTCCAGTGATCT 670919 Query 211 CTGTGGTAACTTTTCTGGCACC 232 |||||||||||| ||| |||| Sbjct 670918 CTGTGGTAACTTGCCTGACACC 670897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854207426784