Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23]
22,539 sequences; 2,798,152,141 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq18095 304 4e-80
seq14541 206 9e-51
seq22317 181 3e-43
seq1669 163 9e-38
seq14985 145 2e-32
seq15374 114 4e-23
seq3335 105 2e-20
seq19307 80.6 9e-13
>seq18095
Length=15613165
Score = 304 bits (336), Expect = 4e-80
Identities = 249/297 (84%), Gaps = 7/297 (2%)
Strand=Plus/Plus
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
||||| | |||||||| ||||| || |||| | | ||||||||||||| ||||||
Sbjct 11496391 CCCACCT-TTCTACACTTCTCACATCTCGTCACCGTGCCAGACTAGAGTCAAGTTCAACA 11496449
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAA-GCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||| || | ||||||| ||||| |||| |||||||||||||||||| ||| ||
Sbjct 11496450 GGGTCTTC---CCTCTCTGATTCTGCCAAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGA 11496506
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
| |||| ||||||||||||||||||| || || ||||||| ||||||||||||||||||
Sbjct 11496507 TCGTAGGTAGGGACAGTGGGAATCTCATTCATGCATTCATATGCGTCACTAATTAGATGA 11496566
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
||| ||||||||||||||||||||||||| ||||||| || | |||| ||| | ||| |
Sbjct 11496567 CGAAGCATTTGGCTACCTTAAGAGAGTCACAGTTACTTCCACTGTTT-CCCTCACTTCAT 11496625
Query 478 TGAATTTCTTCA-CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||| || ||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 11496626 TGAGTTCCTTCAGTTTTGACATTCAGAGCACTGGGTAGAAATCACATTGTCTCAACA 11496682
>seq14541
Length=4766766
Score = 206 bits (228), Expect = 9e-51
Identities = 209/268 (78%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311
|||||||| |||| ||||| | | | | || |||||||||||||||| ||||||
Sbjct 2079424 CACCTCTCTTGTCACTTCACTGTGCCCGGTCACAGCCAAGCTCAACAGGGTCCCCTTTCC 2079483
Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371
| ||||||| | ||| ||| | || |||||||||||||||| ||| || |||||
Sbjct 2079484 CT-CTGATTCGGTCAAACCCATCCCTGTGGCTGTGGTTTCGCTGGATCCGAGGCAGGGAT 2079542
Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431
| ||||||||| || | |||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 2079543 GG-GGGAATCTCCTTCGTGCATTTGTGCGTGTCTCTAATTAGATGACCAGGCATTTGGCT 2079601
Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491
||| ||||||||| | |||||||| |||| ||||| || || | | | ||||||| |
Sbjct 2079602 ACCG-AAGAGAGTCCTGGTTACTCCAGCCGATTACCGGCACTGTGCTTAGTTTCTTCGCG 2079660
Query 492 TTGACATTCAGAGCACTGGGCAGAAATC 519
||||||||||| || |||||||||||||
Sbjct 2079661 TTGACATTCAGGGCCCTGGGCAGAAATC 2079688
>seq22317
Length=7296137
Score = 181 bits (200), Expect = 3e-43
Identities = 189/246 (77%), Gaps = 13/246 (5%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||| |
Sbjct 4482631 CAAGCTCAACGGGGTCTTCTTTCCCTATTGACTCCTCCAAGCCCATTCCCTTGGCTGGAG 4482572
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
|||| || | ||| || | | ||||||||||||| ||| ||| ||||| | || |||||
Sbjct 4482571 TTTCCCTGGGTAGGAGGGA-GAACAGTGGGAATCTTGTTCATCTATTCAAGTGCATCACT 4482513
Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467
||||| ||| ||||||||| ||||||||| ||| |||||| |||||||||
Sbjct 4482512 AATTACTTGATGAGGCATTT----------AGAGAGTCACAGTCACTCCCACCGTTTACC 4482463
Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527
| | ||||||||||| |||| || ||||| || |||||||||||||| | |
Sbjct 4482462 TAATC-TCATTGAATTTCTTTACTTAGA-TTTCAGTGCTCTGGGCAGAAATCAAGTCATG 4482405
Query 528 TCAACA 533
||||||
Sbjct 4482404 TCAACA 4482399
>seq1669
Length=7097633
Score = 163 bits (180), Expect = 9e-38
Identities = 182/239 (76%), Gaps = 3/239 (1%)
Strand=Plus/Minus
Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|| ||||| | ||||||| ||||||||| ||| | | || |||||||| ||| | |||
Sbjct 4857234 TATAGTCAGGTTCAACAGAGTCTTCTTTGCCCACAGGTTTTGCCAAGCCA-TTCACCTGG 4857176
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
|||||||||| ||||| ||| || |||| | ||||| || | |||||||| | |
Sbjct 4857175 CTGTGGTTTCATCAGATAATAGGTAAAGACAATAGGAATATCACTCGACCATTCATACAC 4857116
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461
|| ||| ||||||||| ||||||||||| || | |||||||||| | ||| ||| ||
Sbjct 4857115 ATCCCTATTTAGATGACAAGGCATTTGGCAACTATGAGAGAGTCATGGCTACACCC-ACG 4857057
Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||| || | ||| || |||||||| |||||| |||||||||||| |||| || |||
Sbjct 4857056 TTTGCCTGACCTTCCATGGATTTCTTCCCTTTGA-ATTCAGAGCACTAGGCAAAACTCA 4856999
>seq14985
Length=10633310
Score = 145 bits (160), Expect = 2e-32
Identities = 133/167 (80%), Gaps = 7/167 (4%)
Strand=Plus/Minus
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||||| | | |||||||||||||| || || |||| ||| | || |||| ||||||||
Sbjct 5895463 TAGTAGGTGGAGACAGTGGGAATCTTATTCATTCATTGATGGGTGTTACTATTTAGATGA 5895404
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
| |||||||| |||||| |||||||||||||||| |||| | | ||| |
Sbjct 5895403 TGGGGCATTTGTATACCTT--GAGAGTCATAGTTACTATG-----TTACTCTCACTTCAT 5895351
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524
|||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 5895350 TGAATTTCTTCACTTTGATGTTCAGAGCACTGGGCAGAAATTACATT 5895304
>seq15374
Length=4994092
Score = 114 bits (126), Expect = 4e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
|||| ||||| |||||| ||||||| ||| |||| | |||||||||||||||||||
Sbjct 3618807 TCTTCTGCTCCACAGGAAGTTTCTGTCTTCCCTGAGCTCGCCTTAGGACACCTGCGTTAC 3618748
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 3618747 CGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 3618700
>seq3335
Length=16774894
Score = 105 bits (116), Expect = 2e-20
Identities = 100/128 (78%), Gaps = 5/128 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || ||| ||||||| |||| |||| | ||||||||||||||| |||
Sbjct 1436963 CTTCTGCTCCACGGGACGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTACT 1436904
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| ||| ||| ||||||||| ||||||||||||||| || |||| |||||| |
Sbjct 1436903 GTTTGGCAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 1436849
Query 127 GGCCCGCG 134
|| ||||
Sbjct 1436848 GGGTCGCG 1436841
>seq19307
Length=499004
Score = 80.6 bits (88), Expect = 9e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506
|| |||| || ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 87103 TTTCTCCTGCTGTTTACCTGCGCTTTGTTGAATTTCTTCACTTTGACATTCAGAGCA 87047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634831442272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |