Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq18095 304 4e-80 seq14541 206 9e-51 seq22317 181 3e-43 seq1669 163 9e-38 seq14985 145 2e-32 seq15374 114 4e-23 seq3335 105 2e-20 seq19307 80.6 9e-13 >seq18095 Length=15613165 Score = 304 bits (336), Expect = 4e-80 Identities = 249/297 (84%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||| | |||||||| ||||| || |||| | | ||||||||||||| |||||| Sbjct 11496391 CCCACCT-TTCTACACTTCTCACATCTCGTCACCGTGCCAGACTAGAGTCAAGTTCAACA 11496449 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAA-GCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||| || | ||||||| ||||| |||| |||||||||||||||||| ||| || Sbjct 11496450 GGGTCTTC---CCTCTCTGATTCTGCCAAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGA 11496506 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 | |||| ||||||||||||||||||| || || ||||||| |||||||||||||||||| Sbjct 11496507 TCGTAGGTAGGGACAGTGGGAATCTCATTCATGCATTCATATGCGTCACTAATTAGATGA 11496566 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||| ||||||||||||||||||||||||| ||||||| || | |||| ||| | ||| | Sbjct 11496567 CGAAGCATTTGGCTACCTTAAGAGAGTCACAGTTACTTCCACTGTTT-CCCTCACTTCAT 11496625 Query 478 TGAATTTCTTCA-CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| || ||||| ||||||||||||||||||||| ||||||||||||| |||||| Sbjct 11496626 TGAGTTCCTTCAGTTTTGACATTCAGAGCACTGGGTAGAAATCACATTGTCTCAACA 11496682 >seq14541 Length=4766766 Score = 206 bits (228), Expect = 9e-51 Identities = 209/268 (78%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311 |||||||| |||| ||||| | | | | || |||||||||||||||| |||||| Sbjct 2079424 CACCTCTCTTGTCACTTCACTGTGCCCGGTCACAGCCAAGCTCAACAGGGTCCCCTTTCC 2079483 Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 | ||||||| | ||| ||| | || |||||||||||||||| ||| || ||||| Sbjct 2079484 CT-CTGATTCGGTCAAACCCATCCCTGTGGCTGTGGTTTCGCTGGATCCGAGGCAGGGAT 2079542 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 | ||||||||| || | |||| |||| ||| ||||||||||||| |||||||||||| Sbjct 2079543 GG-GGGAATCTCCTTCGTGCATTTGTGCGTGTCTCTAATTAGATGACCAGGCATTTGGCT 2079601 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||| ||||||||| | |||||||| |||| ||||| || || | | | ||||||| | Sbjct 2079602 ACCG-AAGAGAGTCCTGGTTACTCCAGCCGATTACCGGCACTGTGCTTAGTTTCTTCGCG 2079660 Query 492 TTGACATTCAGAGCACTGGGCAGAAATC 519 ||||||||||| || ||||||||||||| Sbjct 2079661 TTGACATTCAGGGCCCTGGGCAGAAATC 2079688 >seq22317 Length=7296137 Score = 181 bits (200), Expect = 3e-43 Identities = 189/246 (77%), Gaps = 13/246 (5%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||| | Sbjct 4482631 CAAGCTCAACGGGGTCTTCTTTCCCTATTGACTCCTCCAAGCCCATTCCCTTGGCTGGAG 4482572 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||| || | ||| || | | ||||||||||||| ||| ||| ||||| | || ||||| Sbjct 4482571 TTTCCCTGGGTAGGAGGGA-GAACAGTGGGAATCTTGTTCATCTATTCAAGTGCATCACT 4482513 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||| ||| ||||||||| ||||||||| ||| |||||| ||||||||| Sbjct 4482512 AATTACTTGATGAGGCATTT----------AGAGAGTCACAGTCACTCCCACCGTTTACC 4482463 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 | | ||||||||||| |||| || ||||| || |||||||||||||| | | Sbjct 4482462 TAATC-TCATTGAATTTCTTTACTTAGA-TTTCAGTGCTCTGGGCAGAAATCAAGTCATG 4482405 Query 528 TCAACA 533 |||||| Sbjct 4482404 TCAACA 4482399 >seq1669 Length=7097633 Score = 163 bits (180), Expect = 9e-38 Identities = 182/239 (76%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || ||||| | ||||||| ||||||||| ||| | | || |||||||| ||| | ||| Sbjct 4857234 TATAGTCAGGTTCAACAGAGTCTTCTTTGCCCACAGGTTTTGCCAAGCCA-TTCACCTGG 4857176 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 |||||||||| ||||| ||| || |||| | ||||| || | |||||||| | | Sbjct 4857175 CTGTGGTTTCATCAGATAATAGGTAAAGACAATAGGAATATCACTCGACCATTCATACAC 4857116 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 || ||| ||||||||| ||||||||||| || | |||||||||| | ||| ||| || Sbjct 4857115 ATCCCTATTTAGATGACAAGGCATTTGGCAACTATGAGAGAGTCATGGCTACACCC-ACG 4857057 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||| || | ||| || |||||||| |||||| |||||||||||| |||| || ||| Sbjct 4857056 TTTGCCTGACCTTCCATGGATTTCTTCCCTTTGA-ATTCAGAGCACTAGGCAAAACTCA 4856999 >seq14985 Length=10633310 Score = 145 bits (160), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 7/167 (4%) Strand=Plus/Minus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| | | |||||||||||||| || || |||| ||| | || |||| |||||||| Sbjct 5895463 TAGTAGGTGGAGACAGTGGGAATCTTATTCATTCATTGATGGGTGTTACTATTTAGATGA 5895404 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 | |||||||| |||||| |||||||||||||||| |||| | | ||| | Sbjct 5895403 TGGGGCATTTGTATACCTT--GAGAGTCATAGTTACTATG-----TTACTCTCACTTCAT 5895351 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 5895350 TGAATTTCTTCACTTTGATGTTCAGAGCACTGGGCAGAAATTACATT 5895304 >seq15374 Length=4994092 Score = 114 bits (126), Expect = 4e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||| ||||| |||||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 3618807 TCTTCTGCTCCACAGGAAGTTTCTGTCTTCCCTGAGCTCGCCTTAGGACACCTGCGTTAC 3618748 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 3618747 CGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 3618700 >seq3335 Length=16774894 Score = 105 bits (116), Expect = 2e-20 Identities = 100/128 (78%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 1436963 CTTCTGCTCCACGGGACGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTACT 1436904 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| ||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 1436903 GTTTGGCAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 1436849 Query 127 GGCCCGCG 134 || |||| Sbjct 1436848 GGGTCGCG 1436841 >seq19307 Length=499004 Score = 80.6 bits (88), Expect = 9e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 || |||| || ||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 87103 TTTCTCCTGCTGTTTACCTGCGCTTTGTTGAATTTCTTCACTTTGACATTCAGAGCA 87047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634831442272