Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2224 138 3e-30 seq18096 93.3 1e-16 seq20873 89.7 2e-15 >seq2224 Length=17281721 Score = 138 bits (152), Expect = 3e-30 Identities = 125/152 (82%), Gaps = 9/152 (6%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAA 397 |||||||||| |||||||||||||||| |||||||| ||| | || | | ||||| Sbjct 9668531 AGCATGTATTTGCTCTAGAATTACCACAGTTATCCAAGTAAGAGAGGAGCGAGTGATCAA 9668590 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATAC 455 | | | |||||||||||||||||||||| |||||||||| ||| || | ||| ||| Sbjct 9668591 ACGAGCCATAACTGATTTAATGAGCCATTTGCAGTTTCACCGTACCAGCTGTGCGTAT-- 9668648 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||||||||||||||| |||||||||| Sbjct 9668649 TTAGACATGCATGGCTTAATCCTTGAGACAAG 9668680 Score = 91.5 bits (100), Expect = 4e-16 Identities = 115/152 (76%), Gaps = 11/152 (7%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT----CAAA 398 |||||||||||| ||||||| ||||| |||| ||| | || ||| | | |||| Sbjct 8324029 AGCATGTATTAGTTCTAGAAGCACCACAGTTACCCAAG-AG--AGGAGCCAGTGGCCAAA 8324085 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAG-ATTGCTTATACT 456 ||| |||||||||||||||||||||| |||||||||||| || ||| | ||| Sbjct 8324086 GGAACCATAACTGATTTAATGAGCCATTTACAGTTTCACTGTGCCAGCCGTGC--ACACT 8324143 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || ||||||| ||||| ||| | |||||||| Sbjct 8324144 TACACATGCACAGCTTAGTCTCTCAGACAAGC 8324175 >seq18096 Length=5987638 Score = 93.3 bits (102), Expect = 1e-16 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 |||||| |||||||| |||| || || ||| |||||||||||||||||||| || | Sbjct 2382615 GTCACTGCCTCCCCGCGTCGTGAGCAGGGAATCGGCGCGCCTGCTGCCTTCCTTCCATAT 2382556 Query 111 GGTAGCCGTTTCTCAGGCTCCC--TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 || || | ||||| |||||||| |||||| |||| || | | | ||| | | || | Sbjct 2382555 GGGAGGCATTTCTAAGGCTCCCTCTCTCCGCAATCCAAAACCGAATGCCCATCAACCATG 2382496 Query 169 GATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGAT--AGGGCAGAAATTTGAAT 225 | ||| |||||||| || | ||| || | |||||| | |||||||| ||| ||| Sbjct 2382495 GTCACCGTGGTAGGCACAGT-GACTATCACCAGAAGTTGGTTAAGGGCAGACATTCAAAT 2382437 Query 226 G 226 | Sbjct 2382436 G 2382436 >seq20873 Length=9479699 Score = 89.7 bits (98), Expect = 2e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| | ||| |||||||||| || ||| |||||||||| Sbjct 7795928 AAAGAGTCCTGTATTGTTATTTTTCATCATTACCTCCCCGGGTAGGGGGCGGGTAATTTG 7795869 Query 86 CGCGCCTGCTGCCTTCCTTGGA 107 |||||||||||||||||||||| Sbjct 7795868 CGCGCCTGCTGCCTTCCTTGGA 7795847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510059570944