Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20752 122 4e-25 seq25095 100 1e-18 seq10774 100 1e-18 seq14324 91.5 6e-16 seq17428 87.8 7e-15 seq8742 86.0 3e-14 seq4554 80.6 1e-12 seq4395 77.0 1e-11 >seq20752 Length=470434 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 314965 TGTTACGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 315024 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | || || ||| |||||||||| |||||| | ||||||||||||||| Sbjct 315025 GTGGAGATCCATTGCAGTCCTGTCGTGCAAATCCATCGTCCGACCTGGGTATAGGGGCGA 315084 >seq25095 Length=577598 Score = 100 bits (110), Expect = 1e-18 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||| ||||| |||||||||||||||| |||| || Sbjct 364110 GAGCATGAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGGCACAG 364169 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| ||||||| | ||| || ||| ||||||||| || | || Sbjct 364170 CCAGAGGAAACTCTTGTGGAGGTCCATAGCAGTCCTGATGTGCAAATCAGTCATACAACC 364229 Query 669 TGGGTATAGGGGCGA 683 ||||| ||||| ||| Sbjct 364230 TGGGTGTAGGGACGA 364244 >seq10774 Length=296526 Score = 100 bits (110), Expect = 1e-18 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || |||||| |||||||||| || |||| ||||||||||||||||||| Sbjct 187943 TGTTAGGCACCAAAAGATAATGAACTATGCTTGGGCAGGGCGAAGCCAGAGGAAACTCTG 188002 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| | | ||| || ||| ||||||||||| ||||| || || |||||||||| Sbjct 188003 GTGGGCGTCTGTAGCAGTCCTGACGTGCAAATCGGTCGTCTGATCTGTGTATAGGGGC 188060 >seq14324 Length=219519 Score = 91.5 bits (100), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| |||||||||||||||||| Sbjct 177772 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTC 177713 Query 624 GTGGAGGCTC-GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || || | || ||| ||| ||||||| ||| | ||| || |||||||||| || Sbjct 177712 CTGG-GGTTCTGTAGTGGTCCTGACGTGCAAGTCGGTAGTCTGATCTGGGTATAGGAGC 177655 >seq17428 Length=1960752 Score = 87.8 bits (96), Expect = 7e-15 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| |||||||||||| | || || | |||||| | | |||| ||||||| Sbjct 74719 GAGTTGGGTTGCTTGGGAATGCAGACCAAAGTGAGTGGTAAACTCCATCTATGGCTAAAT 74660 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| | | ||||| ||||||| |||||| | Sbjct 74659 ACTGGCATGAGACCAATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 74600 Query 160 AGAGAGTTAAA 170 ||||| || || Sbjct 74599 AGAGACTTCAA 74589 >seq8742 Length=625005 Score = 86.0 bits (94), Expect = 3e-14 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| ||||| | | | |||| || || | ||||| ||||||||||||| || ||| Sbjct 20798 GAGCAAGAGAACATGTTGTTAGGTACCAAGAGATGATGAACTATGCCTGGGCAGCACGAA 20857 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| ||| |||||| | |||||| ||| |||| ||||| || || || Sbjct 20858 GCCAGAGGAAACGCTGTTGGAGGTCTGTAGCGGTCCTGACGTGTAAATCAGTCATCTGAT 20917 Query 668 TTGGGTATAGGG 679 ||||||| ||| Sbjct 20918 CTGGGTATGGGG 20929 >seq4554 Length=1123129 Score = 80.6 bits (88), Expect = 1e-12 Identities = 97/131 (74%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||| |||||||||||||||||||| | | ||||| Sbjct 187262 GAGCATGAGCACATGTGTTAGGAAAAAGAAGATGGTGAACTATGCCTGGGCAAGATGAAG 187203 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| |||||||||| | || ||| ||| | |||||| ||| ||| || Sbjct 187202 CCAGAGGAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGTCCAACC 187145 Query 669 TGGGTATAGGG 679 ||| || |||| Sbjct 187144 TGGATACAGGG 187134 >seq4395 Length=1160234 Score = 77.0 bits (84), Expect = 1e-11 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| | || | || || ||||||||||||||||| |||| || | |||||| ||| Sbjct 154944 AGCATGG-TGCTAGGGCCTAAAAGATGGTGAACTATGGCTGAGCAGAGGAAAGCCACAGG 155002 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||| |||||||| | | || |||||| ||||| || | || || | ||||||| Sbjct 155003 AAACTC-GGTGGAGGTTTGTAGTAGTTCTGATGTGCAGATTGGTCATCTGACCTGGGTAT 155061 Query 676 A 676 | Sbjct 155062 A 155062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077747063600