Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03]
105,032 sequences; 2,977,074,946 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq20752 122 4e-25
seq25095 100 1e-18
seq10774 100 1e-18
seq14324 91.5 6e-16
seq17428 87.8 7e-15
seq8742 86.0 3e-14
seq4554 80.6 1e-12
seq4395 77.0 1e-11
>seq20752
Length=470434
Score = 122 bits (134), Expect = 4e-25
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 314965 TGTTACGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 315024
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||| | || || ||| |||||||||| |||||| | |||||||||||||||
Sbjct 315025 GTGGAGATCCATTGCAGTCCTGTCGTGCAAATCCATCGTCCGACCTGGGTATAGGGGCGA 315084
>seq25095
Length=577598
Score = 100 bits (110), Expect = 1e-18
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| ||||| ||||| |||||||||||||||| |||| ||
Sbjct 364110 GAGCATGAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGGCACAG 364169
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||| ||||||| | ||| || ||| ||||||||| || | ||
Sbjct 364170 CCAGAGGAAACTCTTGTGGAGGTCCATAGCAGTCCTGATGTGCAAATCAGTCATACAACC 364229
Query 669 TGGGTATAGGGGCGA 683
||||| ||||| |||
Sbjct 364230 TGGGTGTAGGGACGA 364244
>seq10774
Length=296526
Score = 100 bits (110), Expect = 1e-18
Identities = 93/118 (79%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || || |||||| |||||||||| || |||| |||||||||||||||||||
Sbjct 187943 TGTTAGGCACCAAAAGATAATGAACTATGCTTGGGCAGGGCGAAGCCAGAGGAAACTCTG 188002
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||| | | ||| || ||| ||||||||||| ||||| || || ||||||||||
Sbjct 188003 GTGGGCGTCTGTAGCAGTCCTGACGTGCAAATCGGTCGTCTGATCTGTGTATAGGGGC 188060
>seq14324
Length=219519
Score = 91.5 bits (100), Expect = 6e-16
Identities = 93/119 (78%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || || ||||||| | ||||||||||| |||| ||||||||||||||||||
Sbjct 177772 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTC 177713
Query 624 GTGGAGGCTC-GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || || | || ||| ||| ||||||| ||| | ||| || |||||||||| ||
Sbjct 177712 CTGG-GGTTCTGTAGTGGTCCTGACGTGCAAGTCGGTAGTCTGATCTGGGTATAGGAGC 177655
>seq17428
Length=1960752
Score = 87.8 bits (96), Expect = 7e-15
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| |||||||||||| | || || | |||||| | | |||| |||||||
Sbjct 74719 GAGTTGGGTTGCTTGGGAATGCAGACCAAAGTGAGTGGTAAACTCCATCTATGGCTAAAT 74660
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| |||| |||||| |||| ||||||| | | ||||| ||||||| |||||| |
Sbjct 74659 ACTGGCATGAGACCAATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 74600
Query 160 AGAGAGTTAAA 170
||||| || ||
Sbjct 74599 AGAGACTTCAA 74589
>seq8742
Length=625005
Score = 86.0 bits (94), Expect = 3e-14
Identities = 99/132 (75%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
||| ||||| | | | |||| || || | ||||| ||||||||||||| || |||
Sbjct 20798 GAGCAAGAGAACATGTTGTTAGGTACCAAGAGATGATGAACTATGCCTGGGCAGCACGAA 20857
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
|||||||||||| ||| |||||| | |||||| ||| |||| ||||| || || ||
Sbjct 20858 GCCAGAGGAAACGCTGTTGGAGGTCTGTAGCGGTCCTGACGTGTAAATCAGTCATCTGAT 20917
Query 668 TTGGGTATAGGG 679
||||||| |||
Sbjct 20918 CTGGGTATGGGG 20929
>seq4554
Length=1123129
Score = 80.6 bits (88), Expect = 1e-12
Identities = 97/131 (74%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| ||| |||||||||||||||||||| | | |||||
Sbjct 187262 GAGCATGAGCACATGTGTTAGGAAAAAGAAGATGGTGAACTATGCCTGGGCAAGATGAAG 187203
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||| |||||||||| | || ||| ||| | |||||| ||| ||| ||
Sbjct 187202 CCAGAGGAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGTCCAACC 187145
Query 669 TGGGTATAGGG 679
||| || ||||
Sbjct 187144 TGGATACAGGG 187134
>seq4395
Length=1160234
Score = 77.0 bits (84), Expect = 1e-11
Identities = 91/121 (75%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
||||| | || | || || ||||||||||||||||| |||| || | |||||| |||
Sbjct 154944 AGCATGG-TGCTAGGGCCTAAAAGATGGTGAACTATGGCTGAGCAGAGGAAAGCCACAGG 155002
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
|||||| |||||||| | | || |||||| ||||| || | || || | |||||||
Sbjct 155003 AAACTC-GGTGGAGGTTTGTAGTAGTTCTGATGTGCAGATTGGTCATCTGACCTGGGTAT 155061
Query 676 A 676
|
Sbjct 155062 A 155062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2077747063600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |