Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10551 167 4e-39 seq24903 149 1e-33 seq4643 143 4e-32 seq16226 131 3e-28 >seq10551 Length=57650 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 29123 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 29064 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 29063 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 29007 >seq24903 Length=1203141 Score = 149 bits (164), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||| | |||||||||| ||||||||| |||| || |||| ||| ||| | |||| Sbjct 177835 CTATGAGCATCACAGATCTGTTATTGT-TCAATCTCGGATTG-CTGAGCACCACTTGTCC 177892 Query 106 CTCTAAGAAGCCAGCCA---CCAAC----CATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 | ||||||||| | || || || | ||| ||| | |||| | | | Sbjct 177893 CCCTAAGAAGCTGGGGGAGGCCGACTGCTCAGGGATCATGTAACTAGTCAGCATGCCATG 177952 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||| |||||||||||| ||||||||| |||||| |||||||| Sbjct 177953 GTCTCATTCCTTATCAGAATTTACCAGACAAATCGCTCCACCAATTAAGAATGGCCATGC 178012 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||| |||||||||| |||||||||| Sbjct 178013 ACCACCACCCATAGAATCGAGAAAGAGCTGTCAATCTGTC 178052 >seq4643 Length=3609207 Score = 143 bits (158), Expect = 4e-32 Identities = 162/212 (76%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||||| |||| | | |||||||||||||||||||||||||||| || Sbjct 2495062 GTCAGTGTAGCACACGTGCAGCCCTGGATATCTAAGGGCATCACAGACCTGTTATTG-CT 2495120 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC-CAT 130 ||| | || |||||| | |||| | |||||||||||||| | | | || | Sbjct 2495121 CAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGAATGCTGACTGCT 2495179 Query 131 AGTCG---ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 2495180 TGTGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 2495239 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| || ||||| Sbjct 2495240 AAATTACTCCACCAACTAAGAACTGCTATGCA 2495271 >seq16226 Length=3262196 Score = 131 bits (144), Expect = 3e-28 Identities = 100/117 (85%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || |||| ||| |||||| |||||||||||||||| |||||||| Sbjct 689391 CTAGTTAGCATTTCAAAGTCTTGTTTGTTATCAAAATTAACCAGACAAATAGCTCCACCA 689332 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||| ||||||||| ||||| |||||||||||||||||| || Sbjct 689331 ACTAAGAATGGCCATGCA-CACCACCCACGGAATCGAGAAAGAGCTATCAATCTATC 689276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795989257992