Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03]
105,032 sequences; 2,977,074,946 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 279 2e-72
seq2363 154 4e-35
seq10549 113 1e-22
seq11794 109 2e-21
seq21589 77.0 1e-11
>seq1114
Length=8586970
Score = 279 bits (308), Expect = 2e-72
Identities = 205/236 (87%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 5713010 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTT-TCGTCACTACCTC 5712952
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5712951 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 5712892
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 5712891 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 5712832
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|| |||||||||||||||||||||||||| || ||||| | ||||||
Sbjct 5712831 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 5712776
>seq2363
Length=3141155
Score = 154 bits (170), Expect = 4e-35
Identities = 103/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 416403 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 416462
Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 416463 ACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGA 416517
>seq10549
Length=650009
Score = 113 bits (124), Expect = 1e-22
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 563317 TAATTTGCACACCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCA 563376
Query 139 GAATCGAACCCTAAT 153
|||||||||||| ||
Sbjct 563377 GAATCGAACCCTGAT 563391
>seq11794
Length=789757
Score = 109 bits (120), Expect = 2e-21
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156
|| |||||||||||||||||| |||||||||||| | |||||||||| ||| || |||||
Sbjct 200097 CCCTCCTTGGATGTGGTAGCCATTTCTCAGGCTCTCACTCCGGAATCAAACTCTGATTCC 200038
Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
| || |||| | | |||||||||||| || |||| |||||||||| ||||||
Sbjct 200037 CTGTCACCCATGGTCACCATGGTAGGCATGGTGACTGTCATCAAAAGTTGATATGGCAGA 199978
>seq21589
Length=1120649
Score = 77.0 bits (84), Expect = 1e-11
Identities = 113/153 (74%), Gaps = 9/153 (6%)
Strand=Plus/Minus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397
||||||||| || ||||||| |||||| | |||| | | | || || | | | |||
Sbjct 97915 AGCATGTATCAGGTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 97856
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATAC 455
| | | ||| ||||||||||||||||| | ||||||| ||| || || || ||
Sbjct 97855 AGGATCCATACATGATTTAATGAGCCATTTACCGTTTCACCGTACCAGCCATG--TACAC 97798
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
||| | |||||||||||||||||| |||||||
Sbjct 97797 TTACATATGCATGGCTTAATCTTTCTGACAAGC 97765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1508813596672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |