Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1114 279 2e-72 seq2363 154 4e-35 seq10549 113 1e-22 seq11794 109 2e-21 seq21589 77.0 1e-11 >seq1114 Length=8586970 Score = 279 bits (308), Expect = 2e-72 Identities = 205/236 (87%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 5713010 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTT-TCGTCACTACCTC 5712952 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5712951 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 5712892 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 5712891 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 5712832 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || |||||||||||||||||||||||||| || ||||| | |||||| Sbjct 5712831 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 5712776 >seq2363 Length=3141155 Score = 154 bits (170), Expect = 4e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 416403 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 416462 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 416463 ACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGA 416517 >seq10549 Length=650009 Score = 113 bits (124), Expect = 1e-22 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 563317 TAATTTGCACACCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCA 563376 Query 139 GAATCGAACCCTAAT 153 |||||||||||| || Sbjct 563377 GAATCGAACCCTGAT 563391 >seq11794 Length=789757 Score = 109 bits (120), Expect = 2e-21 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 || |||||||||||||||||| |||||||||||| | |||||||||| ||| || ||||| Sbjct 200097 CCCTCCTTGGATGTGGTAGCCATTTCTCAGGCTCTCACTCCGGAATCAAACTCTGATTCC 200038 Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | || |||| | | |||||||||||| || |||| |||||||||| |||||| Sbjct 200037 CTGTCACCCATGGTCACCATGGTAGGCATGGTGACTGTCATCAAAAGTTGATATGGCAGA 199978 >seq21589 Length=1120649 Score = 77.0 bits (84), Expect = 1e-11 Identities = 113/153 (74%), Gaps = 9/153 (6%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||||| || ||||||| |||||| | |||| | | | || || | | | ||| Sbjct 97915 AGCATGTATCAGGTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 97856 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATAC 455 | | | ||| ||||||||||||||||| | ||||||| ||| || || || || Sbjct 97855 AGGATCCATACATGATTTAATGAGCCATTTACCGTTTCACCGTACCAGCCATG--TACAC 97798 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||| | |||||||||||||||||| ||||||| Sbjct 97797 TTACATATGCATGGCTTAATCTTTCTGACAAGC 97765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508813596672