Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10346 223 3e-53 seq8820 111 1e-19 seq17275 95.1 1e-14 seq985 86.0 5e-12 >seq10346 Length=345594 Score = 223 bits (246), Expect = 3e-53 Identities = 601/902 (67%), Gaps = 33/902 (4%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGT--CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATG 61098 |||||| ||| | || || || | ||||||| |||||| | ||||| |||| ||| Sbjct 269866 AGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATG 269807 Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 || || ||||||||||||||||||||||| | |||||||| || ||||||| ||||| Sbjct 269806 TATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACATT 269747 Query 61159 AATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216 ||||||| | | | | || || | |||| || ||||| ||| | Sbjct 269746 TGGCACTGGGAATCCCTGAAGCCCAAGGAGAG--AGATTTTATATCCCATGTTCTGGTTT 269689 Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAG 61275 ||||||| || || || || || ||||| || || |||| || ||| || || || Sbjct 269688 TCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAA 269630 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || || | || || || ||||||| |||||||| |||||||| ||||| | || Sbjct 269629 GTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACATACAT 269570 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || || ||||| ||| | || || || || ||||| | || | ||| | ||| Sbjct 269569 TCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTT 269510 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | |||||||||| || ||||| || || ||| ||| || ||||||||||| | Sbjct 269509 CTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCAC 269450 Query 61456 TGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | |||| | ||||| | ||||||||| | | | ||||| | | | Sbjct 269449 TGGATTGG--GGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCGG 269392 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | || | |||| ||| | ||||| | || || ||| | |||||||| ||||| | Sbjct 269391 AAGGCATCTTTTC---TGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGA 269335 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGAT 61632 |||| || || || || |||||| | || | || | || ||||| | || |||||| Sbjct 269334 TGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGAT 269276 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 |||||| || | ||||||| | ||||| | || |||| || | || | Sbjct 269275 TTTGCTTGCCTGATGTTCAAAC---ACCTGGTACACAAACCACTGGAGTAGAGAGTAAGA 269219 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || || || | || || || ||||||||||| || ||||| || ||||| || Sbjct 269218 GAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGTG 269159 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | || || |||||||| |||||| ||| || ||||| ||||| || ||| | Sbjct 269158 AAGCCTATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGA 269099 Query 61813 CTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTC 61869 | || | || ||||| || ||| || | | | | || | ||||||||||| || Sbjct 269098 C--ATGCTGGAACTGGGTTTG-AGCAAGGTTTTCAGAGTA--GAGAACCCATTTGACTTT 269044 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | ||||| || | |||||||| || || ||||| | ||| || ||| Sbjct 269043 ATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAGAGTAACGGAGTAT 268989 Query 61930 CA 61931 || Sbjct 268988 CA 268987 >seq8820 Length=2893063 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 2560721 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 2560662 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||| Sbjct 2560661 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 2560602 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 2560601 AGACTCAATGATGGCATACCAAAG 2560578 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 2564367 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAG 2564308 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 2564307 ATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 2564248 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 2564247 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 2564204 >seq17275 Length=3305369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 1136992 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1137051 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 1137052 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 1137098 >seq985 Length=6397689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 2223594 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 2223653 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 | || |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 2223654 ACATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 2223708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059082148480