Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq43180 356 5e-96 seq42595 149 1e-33 >seq43180 Length=4985 Score = 356 bits (394), Expect = 5e-96 Identities = 277/326 (85%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 13 GGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGT 72 ||||||||||||||||||||| || ||| |||||||||||||||| || ||| || Sbjct 3550 GGGGGTGAAATAGACCCTGAAACCATACGCTTACAAGCGGTCGGAGCAGATAAGTTCTGT 3609 Query 73 GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGC 132 |||||||||||||||||||||||||||||||||||| || |||| || |||||||| || Sbjct 3610 GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTCACTGGCAAGGTTAAGTGC 3669 Query 133 TTCAG-GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGA-CGAGTTGGTGGCGC 190 || | | ||| ||||| || ||||||||| || ||||||||| | ||| |||| | Sbjct 3670 TTTAAAGTACGT-AGCCGGAGCGAAAGCGAGTCTGAACAGGGCGTGCTAGTCAGTGGAGG 3728 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||||||||||||||||||||||||| ||||||||||||| ||||| | ||| Sbjct 3729 TAGACGCGAAACCTTGTGATCTACCCATGAGCAGGTTGAAGGTTGGGTAAAACCAACTGG 3788 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||| Sbjct 3789 AGGACCGAACCAGTAAACGTTGAAAAGTTTTTGGATGACTTGTGGGTAGGGGTGAAAGGC 3848 Query 311 CAATCAAACTGGGAAATAGCTCGTAC 336 |||||||||||||||||||||||||| Sbjct 3849 CAATCAAACTGGGAAATAGCTCGTAC 3874 >seq42595 Length=2895 Score = 149 bits (164), Expect = 1e-33 Identities = 231/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | || |||||| || |||||| | | Sbjct 2382 AGGGGAGTGAAAGAGATCCTGAAACCGTGTGCTTACAAGTAGTTGGAGCCCCCTTCGGGG 2323 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| | |||| || ||||| | || ||| |||||||| Sbjct 2322 GTGACAGCGTACCTTTTGTAGAATGGACCGGCGAGTGACGATTCTA-AGCAAGGTTAAG- 2265 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGCG 189 || || || ||||| || ||||||||| || || ||||||| ||||| || Sbjct 2264 -CTGAAGAGGCGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGAATGAGTTTAGGGTT 2207 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| ||||||| ||||||||||||| | |||| |||||| |||||| | ||| Sbjct 2206 GTCGACCCGAAACCGTGTGATCTACCCATGTCCAGGGTGAAGTTCAGGTAACACTGAATG 2147 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||||||| | ||| |||| | |||||| | |||||||||||||| | Sbjct 2146 GAGGCCCGAACCCACGCATGTTAAAAAATGCGGGGATGAGGTGTGGGTAGGGGTGAAATG 2087 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||| ||| ||| |||||| || Sbjct 2086 CCAATCGAACACGGAGATAGCTGGT 2062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971481739264