Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq36885 206 4e-51 seq103156 197 2e-48 seq96747 194 3e-47 seq38450 192 9e-47 seq38417 149 9e-34 seq57302 143 4e-32 seq64219 80.6 4e-13 seq44111 78.8 1e-12 >seq36885 Length=681 Score = 206 bits (228), Expect = 4e-51 Identities = 159/185 (86%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 52 AGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111 ||||||| ||||||| |||| ||| ||||||||||||||||||||| ||||||| | ||| Sbjct 3 AGGAATT-CCTCGTTTAAGATCAAAAATTGCAATGATCTATCCCCAGCACGATGCACTTT 61 Query 112 CAAA-GATTACCCGGACCTGTCGGCCAAGGTG-AT------AGACTCGTTGAATACATCA 163 |||| ||||||||| ||| || || ||| || | ||||||||||| ||||| Sbjct 62 CAAAAGATTACCCGAGCCTTCCGACCCAGGACTATCAAGTGAAACTCGTTGAATGCATCA 121 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAT 181 Query 224 CTTCC 228 ||||| Sbjct 182 CTTCC 186 Score = 140 bits (154), Expect = 5e-31 Identities = 80/82 (98%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 ACTCGTTGAATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 501 Query 207 CCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||| ||||| Sbjct 502 CCTGTTATTGCCTCAATCTTCC 523 >seq103156 Length=387 Score = 197 bits (218), Expect = 2e-48 Identities = 180/221 (81%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65 ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1 AAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-CCTCGT 58 Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCG 124 | | | | |||||||| | ||||||| ||||| | | ||||| | || |||| Sbjct 59 TTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTTGCCCG 118 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 | ||| | ||||| || || || | ||| | | |||||||||||||||||||||||| Sbjct 119 GGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCA 175 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||||||||||||||||||||||||||||| ||||| || Sbjct 176 GGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 215 >seq96747 Length=339 Score = 194 bits (214), Expect = 3e-47 Identities = 201/253 (79%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65 ||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||| Sbjct 1 AAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCTCGT 58 Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCG 124 | | | || |||| ||| | ||||| | ||||| | | ||||| | |||||| Sbjct 59 TCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTTACCCA 118 Query 125 GACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCC 183 ||| ||| ||||| | ||| | |||||| | | ||||||||||||||||||||||| Sbjct 119 ACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGCGGCCC 177 Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC- 242 |||||||||||||||||||||||||||||||| ||||| || |||| ||||| | | Sbjct 178 CGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAACGCCA 235 Query 243 CATCTCCCTCGAA 255 | | |||||| || Sbjct 236 CTTGTCCCTCTAA 248 >seq38450 Length=350 Score = 192 bits (212), Expect = 9e-47 Identities = 181/225 (80%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||||||| |||| |||||| ||||||||| |||||| || Sbjct 1 TACAAAGGGCAGGGACGTAATCAACGCAAGCTC-ATGACTTGCGCTTACTGGGAATT-CC 58 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||| | | |||||||||| | ||||| |||| || ||||||| | ||| Sbjct 59 TCGTTCATGGGAGACAATTGCAAACCCCAATCCCTATCATGAAAGGATTTCAACGGGTTA 118 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| ||| |||| ||| | ||| |||||| | |||||||||||||||||||| Sbjct 119 CCCGCTCCTCTCGG---AGGGGGAGGACACGTTGATCCCTTCAGTGTAGCGCGCGTGCGG 175 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 176 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 219 >seq38417 Length=698 Score = 149 bits (164), Expect = 9e-34 Identities = 151/193 (78%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 26 CGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAAT 85 ||||||||| ||||| ||| |||||| |||||| ||||||| | | || ||||||||| Sbjct 698 CGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCATGGGAAATAATTGCAAT 641 Query 86 GATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGAT 144 | ||||| ||||||| |||| | ||||||| |||||||||| |||| | Sbjct 640 CCCCGATCCCTATCACGAACGGGGTTCAGCGGGTTACCCGCACCTGTCGGCGAAGGGTAG 581 Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 | || || ||| |||||||||||||||||| |||| | |||||||||||||||||| Sbjct 580 ACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACA 521 Query 205 GACCTGTTATTGC 217 ||||||||||||| Sbjct 520 GACCTGTTATTGC 508 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 187 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 131 >seq57302 Length=218 Score = 143 bits (158), Expect = 4e-32 Identities = 86/88 (98%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 86 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 29 Query 61 CTCGTTGAAGACCAACAATTGCAATGAT 88 |||||||||||||||||||||||||||| Sbjct 28 CTCGTTGAAGACCAACAATTGCAATGAT 1 >seq64219 Length=230 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 70 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 13 Query 61 CTCGTT 66 |||||| Sbjct 12 CTCGTT 7 >seq44111 Length=786367 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | ||||| |||| | | |||||||||||||||||||||||||||| ||| Sbjct 563106 TCAGTGTAGCACACGTGCAGCCCTGGATATCTAAGGGCATCACAGACCTGTTATTG-CTC 563164 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 563165 AATCTCAGGTGGC 563177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751012795080