Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq36885 206 4e-51
seq103156 197 2e-48
seq96747 194 3e-47
seq38450 192 9e-47
seq38417 149 9e-34
seq57302 143 4e-32
seq64219 80.6 4e-13
seq44111 78.8 1e-12
>seq36885
Length=681
Score = 206 bits (228), Expect = 4e-51
Identities = 159/185 (86%), Gaps = 9/185 (5%)
Strand=Plus/Plus
Query 52 AGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111
||||||| ||||||| |||| ||| ||||||||||||||||||||| ||||||| | |||
Sbjct 3 AGGAATT-CCTCGTTTAAGATCAAAAATTGCAATGATCTATCCCCAGCACGATGCACTTT 61
Query 112 CAAA-GATTACCCGGACCTGTCGGCCAAGGTG-AT------AGACTCGTTGAATACATCA 163
|||| ||||||||| ||| || || ||| || | ||||||||||| |||||
Sbjct 62 CAAAAGATTACCCGAGCCTTCCGACCCAGGACTATCAAGTGAAACTCGTTGAATGCATCA 121
Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAT 181
Query 224 CTTCC 228
|||||
Sbjct 182 CTTCC 186
Score = 140 bits (154), Expect = 5e-31
Identities = 80/82 (98%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ACTCGTTGAATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 501
Query 207 CCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||| |||||
Sbjct 502 CCTGTTATTGCCTCAATCTTCC 523
>seq103156
Length=387
Score = 197 bits (218), Expect = 2e-48
Identities = 180/221 (81%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 AAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-CCTCGT 58
Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCG 124
| | | | |||||||| | ||||||| ||||| | | ||||| | || ||||
Sbjct 59 TTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAGCGGGTTGCCCG 118
Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184
| ||| | ||||| || || || | ||| | | ||||||||||||||||||||||||
Sbjct 119 GGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCA 175
Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 176 GGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 215
>seq96747
Length=339
Score = 194 bits (214), Expect = 3e-47
Identities = 201/253 (79%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65
||||||||||||||| ||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 1 AAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCTCGT 58
Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCG 124
| | | || |||| ||| | ||||| | ||||| | | ||||| | ||||||
Sbjct 59 TCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTTACCCA 118
Query 125 GACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCC 183
||| ||| ||||| | ||| | |||||| | | |||||||||||||||||||||||
Sbjct 119 ACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGCGGCCC 177
Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC- 242
|||||||||||||||||||||||||||||||| ||||| || |||| ||||| | |
Sbjct 178 CGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAACGCCA 235
Query 243 CATCTCCCTCGAA 255
| | |||||| ||
Sbjct 236 CTTGTCCCTCTAA 248
>seq38450
Length=350
Score = 192 bits (212), Expect = 9e-47
Identities = 181/225 (80%), Gaps = 7/225 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| ||||||| |||| |||||| ||||||||| |||||| ||
Sbjct 1 TACAAAGGGCAGGGACGTAATCAACGCAAGCTC-ATGACTTGCGCTTACTGGGAATT-CC 58
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
||||| | | |||||||||| | ||||| |||| || ||||||| | |||
Sbjct 59 TCGTTCATGGGAGACAATTGCAAACCCCAATCCCTATCATGAAAGGATTTCAACGGGTTA 118
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|||| ||| |||| ||| | ||| |||||| | ||||||||||||||||||||
Sbjct 119 CCCGCTCCTCTCGG---AGGGGGAGGACACGTTGATCCCTTCAGTGTAGCGCGCGTGCGG 175
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 176 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 219
>seq38417
Length=698
Score = 149 bits (164), Expect = 9e-34
Identities = 151/193 (78%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 26 CGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAAT 85
||||||||| ||||| ||| |||||| |||||| ||||||| | | || |||||||||
Sbjct 698 CGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCATGGGAAATAATTGCAAT 641
Query 86 GATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGAT 144
| ||||| ||||||| |||| | ||||||| |||||||||| |||| |
Sbjct 640 CCCCGATCCCTATCACGAACGGGGTTCAGCGGGTTACCCGCACCTGTCGGCGAAGGGTAG 581
Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204
| || || ||| |||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 580 ACACACGCTGATCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACA 521
Query 205 GACCTGTTATTGC 217
|||||||||||||
Sbjct 520 GACCTGTTATTGC 508
Score = 89.7 bits (98), Expect = 8e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 187 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 131
>seq57302
Length=218
Score = 143 bits (158), Expect = 4e-32
Identities = 86/88 (98%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 86 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 29
Query 61 CTCGTTGAAGACCAACAATTGCAATGAT 88
||||||||||||||||||||||||||||
Sbjct 28 CTCGTTGAAGACCAACAATTGCAATGAT 1
>seq64219
Length=230
Score = 80.6 bits (88), Expect = 4e-13
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| |||
Sbjct 70 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 13
Query 61 CTCGTT 66
||||||
Sbjct 12 CTCGTT 7
>seq44111
Length=786367
Score = 78.8 bits (86), Expect = 1e-12
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | ||||| |||| | | |||||||||||||||||||||||||||| |||
Sbjct 563106 TCAGTGTAGCACACGTGCAGCCCTGGATATCTAAGGGCATCACAGACCTGTTATTG-CTC 563164
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 563165 AATCTCAGGTGGC 563177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751012795080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |