Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq39182 239 8e-61
seq119339 174 3e-41
seq56553 165 1e-38
seq16615 132 9e-29
seq35752 127 4e-27
seq17706 98.7 2e-18
seq2107 75.2 2e-11
>seq39182
Length=5500
Score = 239 bits (264), Expect = 8e-61
Identities = 246/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 76 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGGTCGTGC 135
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 136 CTCCGGTGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATAC 195
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 196 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 254
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 255 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 314
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 315 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 373
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 374 GAACGAAAGTTGGGGG 389
Score = 107 bits (118), Expect = 4e-21
Identities = 100/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131
|| |||||||||| ||||||||||| ||||||||||||| ||| | |||||||||||||
Sbjct 5376 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTTGTATACATTAGCATG 5435
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
| |||| | |||||| | || | ||||| |||||| | ||| || |||||||||
Sbjct 5436 GGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATT 5494
Query 192 AATAGG 197
|| |||
Sbjct 5495 AACAGG 5500
>seq119339
Length=645
Score = 174 bits (192), Expect = 3e-41
Identities = 214/288 (74%), Gaps = 11/288 (4%)
Strand=Plus/Plus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| |||| || |||| || | ||| | |||||||||||| ||||||||||| ||
Sbjct 200 TGCTCTTCGGTGAGTGTCGAGGTGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 259
Query 100 AAAGCAGGCCTT------TGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGC 152
||||| ||| |||| ||||| | |||||||||||||||||| || | |
Sbjct 260 AAAGCGGGCTAAAAATGCTGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 318
Query 153 GGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGGT 210
||||||||||||||||||| || || || ||||||||||||||||||| |||||
Sbjct 319 GGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTAATGATTAATAGGGATAACTGGGGGC 378
Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270
| ||||| || ||||||||||||||||||| ||||| ||| | |||||
Sbjct 379 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGAACATCAGCGAA 438
Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| || |||| | ||||||||| ||||| ||||||||||||| ||
Sbjct 439 AGCATTTGCCAAAGGTGTTTTCATCAATCA-AGAACGAAAGTTAGAGG 485
>seq56553
Length=217
Score = 165 bits (182), Expect = 1e-38
Identities = 156/194 (80%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGT 184
|||||||||||| ||||||||| | |||||||||||||||||||| | ||| | | ||
Sbjct 2 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACTTGAGGT 59
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||| ||||| || |||||| | ||||| ||| |||||||||||||||||
Sbjct 60 AATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGG 119
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|| ||||| ||||||||||||||| || ||||| |||||||||||||||| ||
Sbjct 120 ATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGA 178
Query 305 ACGAAAGTTAGGGG 318
||||||| || ||
Sbjct 179 TCGAAAGTCAGAGG 192
>seq16615
Length=598
Score = 132 bits (146), Expect = 9e-29
Identities = 113/134 (84%), Gaps = 4/134 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||||||||||||||||||||
Sbjct 132 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 74
Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156
|||||||||||| | || |||||| | ||| |||||||| ||||||||| | |||||
Sbjct 73 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 15
Query 157 CTATTTTGTTGGTT 170
||||||||||||||
Sbjct 14 CTATTTTGTTGGTT 1
Score = 84.2 bits (92), Expect = 4e-14
Identities = 76/92 (83%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||||||||||||||||||||
Sbjct 485 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 427
Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGC 128
|||||||||||| | || |||||| | |||
Sbjct 426 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGC 395
>seq35752
Length=288
Score = 127 bits (140), Expect = 4e-27
Identities = 113/139 (81%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||
Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTCTGAATACATTAGCAT 85
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | | |||| | |||| |||| |||||| || ||| || ||||||||
Sbjct 84 GGGATAACATCACAGGA-TTCCGGTCTTATTGTGTTGGCTTTCGGGATCGGAGTAATGAT 26
Query 191 TAATAGGGATAGTCGGGGG 209
||| ||||| |||||||||
Sbjct 25 TAACAGGGACAGTCGGGGG 7
>seq17706
Length=950375
Score = 98.7 bits (108), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| | | | ||| | | | ||||||||||||||||||||||||
Sbjct 375460 ATGCTCTTAGCTGAGTGTCCTGCCGGGCCGGAAGCGTTTACTTTGAAAAAATTAGAGTGT 375519
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| |||
Sbjct 375520 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CACGG 375578
Query 155 TTCTATTTTGTTGGTTT 171
|||||||||||||||||
Sbjct 375579 TTCTATTTTGTTGGTTT 375595
>seq2107
Length=298
Score = 75.2 bits (82), Expect = 2e-11
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| | || |||| |||| ||| | || ||||||||||||||||||||||||||
Sbjct 70 TGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTC 11
Query 100 AAAGCAGGC 108
|||||||||
Sbjct 10 AAAGCAGGC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913959794176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |