Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq39182 239 8e-61 seq119339 174 3e-41 seq56553 165 1e-38 seq16615 132 9e-29 seq35752 127 4e-27 seq17706 98.7 2e-18 seq2107 75.2 2e-11 >seq39182 Length=5500 Score = 239 bits (264), Expect = 8e-61 Identities = 246/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 76 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGGTCGTGC 135 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 136 CTCCGGTGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATAC 195 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 196 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 254 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 255 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 314 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 315 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 373 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 374 GAACGAAAGTTGGGGG 389 Score = 107 bits (118), Expect = 4e-21 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 || |||||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||| Sbjct 5376 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTTGTATACATTAGCATG 5435 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||| | |||||| | || | ||||| |||||| | ||| || ||||||||| Sbjct 5436 GGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATT 5494 Query 192 AATAGG 197 || ||| Sbjct 5495 AACAGG 5500 >seq119339 Length=645 Score = 174 bits (192), Expect = 3e-41 Identities = 214/288 (74%), Gaps = 11/288 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| || |||| || | ||| | |||||||||||| ||||||||||| || Sbjct 200 TGCTCTTCGGTGAGTGTCGAGGTGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 259 Query 100 AAAGCAGGCCTT------TGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| |||| ||||| | |||||||||||||||||| || | | Sbjct 260 AAAGCGGGCTAAAAATGCTGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 318 Query 153 GGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||||||||||| || || || ||||||||||||||||||| ||||| Sbjct 319 GGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTAATGATTAATAGGGATAACTGGGGGC 378 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| ||| | ||||| Sbjct 379 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGAACATCAGCGAA 438 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | ||||||||| ||||| ||||||||||||| || Sbjct 439 AGCATTTGCCAAAGGTGTTTTCATCAATCA-AGAACGAAAGTTAGAGG 485 >seq56553 Length=217 Score = 165 bits (182), Expect = 1e-38 Identities = 156/194 (80%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGT 184 |||||||||||| ||||||||| | |||||||||||||||||||| | ||| | | || Sbjct 2 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACTTGAGGT 59 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||| ||||| || |||||| | ||||| ||| ||||||||||||||||| Sbjct 60 AATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGG 119 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || ||||| ||||||||||||||| || ||||| |||||||||||||||| || Sbjct 120 ATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGA 178 Query 305 ACGAAAGTTAGGGG 318 ||||||| || || Sbjct 179 TCGAAAGTCAGAGG 192 >seq16615 Length=598 Score = 132 bits (146), Expect = 9e-29 Identities = 113/134 (84%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 132 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 74 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | || |||||| | ||| |||||||| ||||||||| | ||||| Sbjct 73 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 15 Query 157 CTATTTTGTTGGTT 170 |||||||||||||| Sbjct 14 CTATTTTGTTGGTT 1 Score = 84.2 bits (92), Expect = 4e-14 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 485 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 427 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGC 128 |||||||||||| | || |||||| | ||| Sbjct 426 TCAAAGCAGGCCGGTCGCCTGAATACTTCAGC 395 >seq35752 Length=288 Score = 127 bits (140), Expect = 4e-27 Identities = 113/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||| Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTCTGAATACATTAGCAT 85 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | |||| |||| |||||| || ||| || |||||||| Sbjct 84 GGGATAACATCACAGGA-TTCCGGTCTTATTGTGTTGGCTTTCGGGATCGGAGTAATGAT 26 Query 191 TAATAGGGATAGTCGGGGG 209 ||| ||||| ||||||||| Sbjct 25 TAACAGGGACAGTCGGGGG 7 >seq17706 Length=950375 Score = 98.7 bits (108), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | | ||| | | | |||||||||||||||||||||||| Sbjct 375460 ATGCTCTTAGCTGAGTGTCCTGCCGGGCCGGAAGCGTTTACTTTGAAAAAATTAGAGTGT 375519 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| ||| Sbjct 375520 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CACGG 375578 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||||||||||| Sbjct 375579 TTCTATTTTGTTGGTTT 375595 >seq2107 Length=298 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 70 TGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTC 11 Query 100 AAAGCAGGC 108 ||||||||| Sbjct 10 AAAGCAGGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913959794176