Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq43180 163 3e-38 seq42595 75.2 1e-11 >seq43180 Length=4985 Score = 163 bits (180), Expect = 3e-38 Identities = 143/176 (81%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 3050 GGGGGATGCCTTGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTGCGGG 3109 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||||||||||| ||||| |||| |||||||||| |||||| | ||| ||| Sbjct 3110 GATTGGCACATACGAATTAATCCGCAGATTTCCGAATGGGACAACCCACTTAGTTGAAGA 3169 Query 128 -TA--TATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || |||| | || | | |||| ||| | ||||||||||||||||||| Sbjct 3170 CTAAGTATCCTGTAGCAATACAGGAGGCAAACCCGCTGAACTGAAACATCTAAGTA 3225 >seq42595 Length=2895 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || |||| ||| |||||||| | | | ||| | ||| ||| Sbjct 2895 CGGTGGATGCCTTGGCACTGGGAGCCGATGAAGGACGGAACGAACGCCGATACGCTTCGG 2836 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 ||| | | || | |||||||| |||| ||||||||||| |||||| Sbjct 2835 GGAGCTGTAAGTAAGCTTTGATCCGAAGATTTCCGAATGGGGGAACCCG 2787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476174070072