Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq42595 188 1e-45 seq43180 141 1e-31 >seq42595 Length=2895 Score = 188 bits (208), Expect = 1e-45 Identities = 187/241 (78%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||| ||||| || |||||||| ||||| || || ||| Sbjct 1039 TTAACCTTCCAGCACCGGGCAGGTGTCAGCCCCTATACATCACCTTACGGT-TTAGCAGA 1097 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 |||||||||||| |||||||||||||| ||| ||| ||||| | | || | | Sbjct 1098 AACCTGTGTTTTTGGTAAACAGTCGCTTGGATCTTTTCACTGCGGCT--CTCCGGACCCG 1155 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | ||| ||| |||||||||||||||||||||||||| |||||||||| | Sbjct 1156 AAGGTCCTTCGA--------GCACCCCTTCTCCCGAAGTTACGGGGTGATTTTGCCGAGT 1207 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||||| | ||||| ||||| || ||||| ||||||| | || ||||||||||||||| Sbjct 1208 TCCTTAACGAGAGTTCTCCCGAGCGTCTTAGAATTCTCTTCTTGCCCACCTGTGTCGGTT 1267 Query 242 T 242 | Sbjct 1268 T 1268 >seq43180 Length=4985 Score = 141 bits (156), Expect = 1e-31 Identities = 179/248 (72%), Gaps = 16/248 (6%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| | | |||||| Sbjct 4905 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGAT-TTCGCAA 4847 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | || ||| ||||| | | Sbjct 4846 AGCCATGTGTTTTTGCTAAACAGTCGCCTGGGCCTTTTCACTGCGGCTTC---------- 4797 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || | | | || ||||||||||||||||||| ||||||||||||| | Sbjct 4796 -----TCCTTTGACGGAGGAAGCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCTAG 4742 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| |||| ||| | |||||| |||||| || ||| |||||||||||| Sbjct 4741 TTCCTTAGCCATGAATCACTCGAGCACCTTAGGATTCTCACCCCGACTACCTGTGTCGGT 4682 Query 241 TTACGGTA 248 |||||||| Sbjct 4681 TTACGGTA 4674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693488410776