Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq42595 266 8e-69 seq43180 154 4e-35 seq42138 123 6e-26 seq32227 80.6 7e-13 >seq42595 Length=2895 Score = 266 bits (294), Expect = 8e-69 Identities = 314/424 (74%), Gaps = 26/424 (6%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| | | |||||||| | ||||| || ||||||| Sbjct 841 CGCGGGTAACCTGCATCTTCACAGGTACTATAATTTCACCGGGTCTCTCGTTGAGACAGT 900 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | |||||||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 901 ATCCAAATCGTTACACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 960 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC---- 176 ||||||||||||| |||||||||||||||||| |||||||| || | |||||| | Sbjct 961 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAAAGCTTCTCCCCG 1020 Query 177 GTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236 | ||||| | | |||||||||| |||||||||||| |||| |||||||| || Sbjct 1021 AAGGGATAACCTCTCCTTTTAACCTTCCAGCACCGGGCAGGTGTCAGCCCCTATACATCA 1080 Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 ||| || || ||||| |||||||||| |||||||||| || | ||||| Sbjct 1081 CCTTACGGTTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG-------CTTGGATCTTT 1133 Query 297 GACCGGCATGAGCT-TACGGA---GCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCG 352 | || ||| | |||| | | |||||| | || | |||||||||| Sbjct 1134 TCACTGC---GGCTCTCCGGACCCGAAGGTCCTT--------CGAGCACCCCTTCTCCCG 1182 Query 353 AAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATT 412 ||||||||| | ||||||| |||||||| | |||||||| | |||| ||| | ||| Sbjct 1183 AAGTTACGGGGTGATTTTGCCGAGTTCCTTAACGAGAGTTCTCCCGAGCGTCTTAGAATT 1242 Query 413 CTCT 416 |||| Sbjct 1243 CTCT 1246 >seq43180 Length=4985 Score = 154 bits (170), Expect = 4e-35 Identities = 225/316 (71%), Gaps = 29/316 (9%) Strand=Plus/Minus Query 118 ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC-GATCAAGAGCTTCGC 176 |||||||||||||||| |||||||||||||||||| |||||||| | |||| |||||| Sbjct 4985 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTCAAT-GCTTCGG 4927 Query 177 G-TTAG---CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | ||| ||||| | | |||||||||| |||||||||||| |||| || ||||| Sbjct 4926 GATTACTCCCTAACATCCCCCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATAC 4867 Query 233 GTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 || |||||| || ||| || ||||||||| ||||||||||| ||||| | Sbjct 4866 TTCATCTTTCGATTTCGCAAAGCCATGTGTTTTTGCTAAACAGTCGCCTGGGCCTTTTCA 4807 Query 293 CTTCGACCGGCATGAGCTT--ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCC 350 || |||| | ||| |||||| || |||| |||||||| Sbjct 4806 CT----GCGGCTTCTCCTTTGACGGAGGAA-----------------GCGCCCCTTCTCC 4768 Query 351 CGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTA 410 ||||||||| | ||| |||||||||||||||| || || ||| ||| |||| | | Sbjct 4767 CGAAGTTACAGGGCCATTTTGCCTAGTTCCTTAGCCATGAATCACTCGAGCACCTTAGGA 4708 Query 411 TTCTCTACCCAACCAC 426 ||||| ||| || || Sbjct 4707 TTCTCACCCCGACTAC 4692 >seq42138 Length=1005 Score = 123 bits (136), Expect = 6e-26 Identities = 101/120 (84%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| || | | ||||||||| ||| ||| || ||||||| Sbjct 887 GCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCGAG-CTCATGGCCGAGACAGT 945 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1005 >seq32227 Length=2728 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 2062 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2003 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 2002 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259091464704