Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq42595 266 8e-69
seq43180 154 4e-35
seq42138 123 6e-26
seq32227 80.6 7e-13
>seq42595
Length=2895
Score = 266 bits (294), Expect = 8e-69
Identities = 314/424 (74%), Gaps = 26/424 (6%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| || |||||||||||||| | | |||||||| | ||||| || |||||||
Sbjct 841 CGCGGGTAACCTGCATCTTCACAGGTACTATAATTTCACCGGGTCTCTCGTTGAGACAGT 900
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 ATCCAAATCGTTACACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 960
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC---- 176
||||||||||||| |||||||||||||||||| |||||||| || | |||||| |
Sbjct 961 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAAAGCTTCTCCCCG 1020
Query 177 GTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236
| ||||| | | |||||||||| |||||||||||| |||| |||||||| ||
Sbjct 1021 AAGGGATAACCTCTCCTTTTAACCTTCCAGCACCGGGCAGGTGTCAGCCCCTATACATCA 1080
Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296
||| || || ||||| |||||||||| |||||||||| || | |||||
Sbjct 1081 CCTTACGGTTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG-------CTTGGATCTTT 1133
Query 297 GACCGGCATGAGCT-TACGGA---GCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCG 352
| || ||| | |||| | | |||||| | || | ||||||||||
Sbjct 1134 TCACTGC---GGCTCTCCGGACCCGAAGGTCCTT--------CGAGCACCCCTTCTCCCG 1182
Query 353 AAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATT 412
||||||||| | ||||||| |||||||| | |||||||| | |||| ||| | |||
Sbjct 1183 AAGTTACGGGGTGATTTTGCCGAGTTCCTTAACGAGAGTTCTCCCGAGCGTCTTAGAATT 1242
Query 413 CTCT 416
||||
Sbjct 1243 CTCT 1246
>seq43180
Length=4985
Score = 154 bits (170), Expect = 4e-35
Identities = 225/316 (71%), Gaps = 29/316 (9%)
Strand=Plus/Minus
Query 118 ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC-GATCAAGAGCTTCGC 176
|||||||||||||||| |||||||||||||||||| |||||||| | |||| ||||||
Sbjct 4985 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTCAAT-GCTTCGG 4927
Query 177 G-TTAG---CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232
| ||| ||||| | | |||||||||| |||||||||||| |||| || |||||
Sbjct 4926 GATTACTCCCTAACATCCCCCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATAC 4867
Query 233 GTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292
|| |||||| || ||| || ||||||||| ||||||||||| ||||| |
Sbjct 4866 TTCATCTTTCGATTTCGCAAAGCCATGTGTTTTTGCTAAACAGTCGCCTGGGCCTTTTCA 4807
Query 293 CTTCGACCGGCATGAGCTT--ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCC 350
|| |||| | ||| |||||| || |||| ||||||||
Sbjct 4806 CT----GCGGCTTCTCCTTTGACGGAGGAA-----------------GCGCCCCTTCTCC 4768
Query 351 CGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTA 410
||||||||| | ||| |||||||||||||||| || || ||| ||| |||| | |
Sbjct 4767 CGAAGTTACAGGGCCATTTTGCCTAGTTCCTTAGCCATGAATCACTCGAGCACCTTAGGA 4708
Query 411 TTCTCTACCCAACCAC 426
||||| ||| || ||
Sbjct 4707 TTCTCACCCCGACTAC 4692
>seq42138
Length=1005
Score = 123 bits (136), Expect = 6e-26
Identities = 101/120 (84%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60
|||| || | |||||||||| || | | ||||||||| ||| ||| || |||||||
Sbjct 887 GCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCGAG-CTCATGGCCGAGACAGT 945
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1005
>seq32227
Length=2728
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 2062 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2003
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 2002 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 1963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1259091464704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |