Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq42595 392 7e-107 seq43180 250 5e-64 seq42138 140 7e-31 seq32227 82.4 2e-13 >seq42595 Length=2895 Score = 392 bits (434), Expect = 7e-107 Identities = 317/382 (83%), Gaps = 21/382 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || |||||||||| |||| | ||||||||||| |||| Sbjct 847 TAACCTGCATCTTCACAGGTACTATAATTTCACCGGGTCTCTCGTTGAGACAGTATCCAA 906 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 ATCGTTACACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 966 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT-----CGATTGCT 175 |||||||||||||||||||||||||||||||||| | |||| |||| ||| | Sbjct 967 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAAAGCTTCTCCCCGA-AGGG 1025 Query 176 CTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235 |||| ||| ||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1026 ATAACCTCTCCTTTTAACCTTCCAGCACCGGGCAGGTGTCAGCCCCTATACATCACCTTA 1085 Query 236 CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC-C 294 || |||||||||||||||||||||||||||||||||||||| || ||| ||||||| | Sbjct 1086 CGGTTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGATCTTTTCACTGCGGCTC 1145 Query 295 T------------GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCC 342 | ||| | | |||||||||||||| |||||||||||| |||||||| Sbjct 1146 TCCGGACCCGAAGGTCCT--TCGAGCACCCCTTCTCCCGAAGTTACGGGGTGATTTTGCC 1203 Query 343 GAGTTCCTTAACAATAGTTCTC 364 |||||||||||| | ||||||| Sbjct 1204 GAGTTCCTTAACGAGAGTTCTC 1225 >seq43180 Length=4985 Score = 250 bits (276), Expect = 5e-64 Identities = 208/251 (83%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 112 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-- 169 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 4985 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTCAATGCTTCGGG 4926 Query 170 ATTGCTC--TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACA 227 ||| ||| ||||| ||||||||||||||||||||||||||| ||||| | ||||| Sbjct 4925 ATTACTCCCTAACATCCCCCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACT 4866 Query 228 TCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTC 287 || |||| ||| || ||| | | |||||||||| ||||||||||| ||||||| ||| | Sbjct 4865 TCATCTTTCGATTTCGCAAAGCCATGTGTTTTTGCTAAACAGTCGCCTGGGCCTTTTCAC 4806 Query 288 TGCGGCCTGT-CATAGAC-----AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 |||||| | | | | ||| | || ||||||||||| ||||||| ||| |||||||| Sbjct 4805 TGCGGCTTCTCCTTTGACGGAGGAAGCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGC 4746 Query 342 CGAGTTCCTTA 352 | ||||||||| Sbjct 4745 CTAGTTCCTTA 4735 >seq42138 Length=1005 Score = 140 bits (154), Expect = 7e-31 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| || | ||||||||||||| |||| Sbjct 896 CGGCATCTTCACCGCTACTACAATTTCACCGAGCTCATGGCCGAGACAGTGCCCAGATCG 955 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 114 |||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 956 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1005 >seq32227 Length=2728 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 2075 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 2016 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 2015 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 1968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060960320512