Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq36885 282 7e-74 seq96747 188 1e-45 seq38417 152 8e-35 seq31152 149 1e-33 seq44111 143 4e-32 seq38450 141 1e-31 seq103156 140 5e-31 seq26158 131 3e-28 seq18364 96.9 6e-18 >seq36885 Length=681 Score = 282 bits (312), Expect = 7e-74 Identities = 220/261 (84%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 ACTCGTTGAATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 164 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||| ||||||| ||| || || ||||||||||||||||| | Sbjct 165 CCTGTTATTGCCTCAATCTTCCATACGCTAGACGCGCATAGTCCCTCTAAGAAGGTAAGA 224 Query 122 ACCAACCATAGTCGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | ||| | |||||||||||| ||||||||||||||| ||||| Sbjct 225 ACGCAGTGCTGGC-ATGCGCGCACCTATTTAGCAGGACGAGGTCTCGTTCGTTAACGGAA 283 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 284 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCAAAAAATCA 343 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 344 AGAAAGAGCTTTCAGTCTGTC 364 Score = 268 bits (296), Expect = 1e-69 Identities = 205/241 (85%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 ACTCGTTGAATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 501 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||| ||||||| ||| || || ||||||||||||||||| | Sbjct 502 CCTGTTATTGCCTCAATCTTCCATACGCTAGACGCGCATAGTCCCTCTAAGAAGGTAAGA 561 Query 122 ACCAACCATAGTCGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | ||| | |||||||||||| ||||||||||||||| ||||| Sbjct 562 ACGCAGTGCTGGC-ATGCGCGCACCTATTTAGCAGGACGAGGTCTCGTTCGTTAACGGAA 620 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 680 Query 238 A 238 | Sbjct 681 A 681 >seq96747 Length=339 Score = 188 bits (208), Expect = 1e-45 Identities = 161/193 (83%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 151 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 210 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC-CAT 130 ||||| | || ||||| | |||| | |||||||||||||| |||| || || Sbjct 211 -CTCAATC-TCGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAG--TTGCACCGACGCAG 266 Query 131 AGTCGATGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || ||| || |||||||||||| || ||||||||||||||||||||||||||||| Sbjct 267 AGCGGATCGGTGAACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 326 Query 188 AAATCACTCCACC 200 ||||| ||||||| Sbjct 327 AAATCGCTCCACC 339 >seq38417 Length=698 Score = 152 bits (168), Expect = 8e-35 Identities = 149/189 (79%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 187 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 129 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | | || |||||| | ||| | |||||||||||||| | | || ||| | | Sbjct 128 GATC-TCGTGTGGCTGAAGTCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTGGGG 70 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 69 GTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 10 Query 193 ACTCCACCA 201 |||||||| Sbjct 9 GCTCCACCA 1 Score = 91.5 bits (100), Expect = 2e-16 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 569 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 510 Query 71 GC 72 || Sbjct 509 GC 508 >seq31152 Length=480993 Score = 149 bits (164), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||| | |||||||||| ||||||||| |||| || |||| ||| ||| | |||| Sbjct 152169 CTATGAGCATCACAGATCTGTTATTGT-TCAATCTCGGATTG-CTGAGCACCACTTGTCC 152226 Query 106 CTCTAAGAAGCCAGCCA---CCAAC----CATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 | ||||||||| | || || || | ||| ||| | |||| | | | Sbjct 152227 CCCTAAGAAGCTGGGGGAGGCCGACTGCTCAGGGATCATGTAACTAGTCAGCATGCCATG 152286 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||| |||||||||||| ||||||||| |||||| |||||||| Sbjct 152287 GTCTCATTCCTTATCAGAATTTACCAGACAAATCGCTCCACCAATTAAGAATGGCCATGC 152346 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||| |||||||||| |||||||||| Sbjct 152347 ACCACCACCCATAGAATCGAGAAAGAGCTGTCAATCTGTC 152386 >seq44111 Length=786367 Score = 143 bits (158), Expect = 4e-32 Identities = 162/212 (76%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||||| |||| | | |||||||||||||||||||||||||||| || Sbjct 563105 GTCAGTGTAGCACACGTGCAGCCCTGGATATCTAAGGGCATCACAGACCTGTTATTG-CT 563163 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC-CAT 130 ||| | || |||||| | |||| | |||||||||||||| | | | || | Sbjct 563164 CAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGAATGCTGACTGCT 563222 Query 131 AGTCG---ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 563223 TGTGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 563282 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| || ||||| Sbjct 563283 AAATTACTCCACCAACTAAGAACTGCTATGCA 563314 >seq38450 Length=350 Score = 141 bits (156), Expect = 1e-31 Identities = 155/201 (77%), Gaps = 19/201 (9%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 CCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG- 211 Query 73 CTCAAACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--- 127 ||||| | || |||| ||| ||| | ||||||||||||| ||| | ||| Sbjct 212 CTCAATC-TCGTGCGGCTAGAATTGCCGCTTATCCCTCTAAGAAG-AAGCTGCGAACTGG 269 Query 128 -CA-TAGTCGATGG---------GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 || | | | ||| | ||| |||| ||| | |||||||||||||||||| Sbjct 270 ACACCAATTGCTGGAGATCCGTCGACTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGA 329 Query 177 ATTAACCAGACAAATCACTCC 197 |||||||||||||||| |||| Sbjct 330 ATTAACCAGACAAATCGCTCC 350 >seq103156 Length=387 Score = 140 bits (154), Expect = 5e-31 Identities = 177/244 (73%), Gaps = 42/244 (17%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 148 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 207 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--------------- 116 | |||| || | |||| |||| | |||||||||||||| Sbjct 208 C-TCAATCT-CGTGCGGCTCGAAGACGCCGGTCCCTCTAAGAAGAATTTTAATACGTCGT 265 Query 117 ---------------CA----GCCAC-CA-ACCATAGT--CGATGGGGCTATTTAGCAGG 153 || ||| | || ||| | | ||| | |||||||||||| Sbjct 266 CAGTGAGTTGCGCGACACGAGGCCGCGCACACCTAAATAACGACGC--CTATTTAGCAGG 323 Query 154 TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 324 CTAGAGTCTCGTTCGTTACCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGC 383 Query 214 CATG 217 |||| Sbjct 384 CATG 387 >seq26158 Length=3839445 Score = 131 bits (144), Expect = 3e-28 Identities = 100/117 (85%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || |||| ||| |||||| |||||||||||||||| |||||||| Sbjct 1413704 CTAGTTAGCATTTCAAAGTCTTGTTTGTTATCAAAATTAACCAGACAAATAGCTCCACCA 1413763 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||| ||||||||| ||||| |||||||||||||||||| || Sbjct 1413764 ACTAAGAATGGCCATGCA-CACCACCCACGGAATCGAGAAAGAGCTATCAATCTATC 1413819 >seq18364 Length=1033060 Score = 96.9 bits (106), Expect = 6e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||| ||||||||||||||||| |||||||| Sbjct 709029 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGAAATTAACCAGACAAATCGCTCCACCA 709088 Query 202 ACTAAGAACGGCC 214 ||||||||||||| Sbjct 709089 ACTAAGAACGGCC 709101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795753982872