Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq44287 347 2e-93 seq41393 347 2e-93 seq41314 347 2e-93 seq33930 241 2e-61 seq24612 217 3e-54 seq12684 185 1e-44 seq58056 154 3e-35 seq40917 111 3e-22 seq106768 100 5e-19 seq32075 95.1 2e-17 seq33548 89.7 9e-16 seq42595 87.8 3e-15 seq13120 87.8 3e-15 seq38 84.2 4e-14 seq37373 78.8 2e-12 seq33405 73.4 7e-11 >seq44287 Length=2052047 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 746134 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 746075 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 746074 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 746015 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 746014 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 745955 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 745954 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 745895 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 745894 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 745841 >seq41393 Length=2893867 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 2238713 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2238654 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2238653 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2238594 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2238593 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2238534 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2238533 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2238474 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 2238473 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 2238420 >seq41314 Length=101420 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 4650 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 4591 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4590 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 4531 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4530 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 4471 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 4470 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 4411 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 4410 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 4357 >seq33930 Length=681605 Score = 241 bits (266), Expect = 2e-61 Identities = 232/295 (79%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 374753 TACTGAGCAGGATTACCATGGCAACAACCCATCATCAGTAGGGTAAAACTAACCTGTCTC 374812 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | |||||||||||||||||| ||||||||||||||||||||||| || | ||| | Sbjct 374813 ACCATGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATACAGCTCTTGTTG 374872 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||| ||||| ||| |||||||||||| | || || ||| Sbjct 374873 AATTCTGCTTCACAATGATAGGTAGAGC---CATGGAAGGATCAAAACACCACATCTCTA 374929 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || | ||||| |||| ||||||||||||||||| |||||||||||| |||||| || Sbjct 374930 GAAAGGTTTGGCCGCCAGAAGCCAGTTATCCCTGTAGTAACTTTTCTGACACCTCCTGCT 374989 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCAT--GGTTTGTATT 292 | ||| | || | |||||| | | ||| ||||||||| ||| |||||| Sbjct 374990 TAAAACCCAAAAGGTCAGAAGGATTGTGAAGCCCCACTTTCATGGGGTCTGTATT 375044 >seq24612 Length=443934 Score = 217 bits (240), Expect = 3e-54 Identities = 162/189 (86%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||||||||||||||||||||| || |||||||||||| |||| |||||| ||||||| Sbjct 21217 GTAAAACTAACCTGTCTCATGACGTTCCAAACCCAGCTCAGGTTCTCTATTATTGGGTGA 21158 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | |||||||||||| |||| || |||| Sbjct 21157 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGAGCCAACATTGAGGGAT 21101 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||||||| |||||||||||||| |||||| || |||| ||||||||||||||||| || Sbjct 21100 CAAAAAGGGACGTCGCTATGAACTCTTGGCCGCTACAAAGCAGTTATCCCTGTGGTATCT 21041 Query 222 TTTCTGGCA 230 |||||| || Sbjct 21040 TTTCTGACA 21032 >seq12684 Length=246053 Score = 185 bits (204), Expect = 1e-44 Identities = 157/193 (81%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| || | ||||||| |||||| ||||| | ||| ||||||| Sbjct 186054 GTAAAACTAACCTGTCTCACGATGTTCTAAACTAAGCTCAGGTTCCTTGTTACTGGGTGA 186113 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 | |||||| |||| |||||||||||| | ||||||||| || ||| | |||||| Sbjct 186114 TCCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCCAACACCAAAGGAT 186170 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||| || |||||||| |||||| | ||||| ||||||||||||||||| || Sbjct 186171 CAAAAAGCAATGTTGCTATGAATTCTTGGCCACTACAAGGCAGTTATCCCTGTGGTATCT 186230 Query 222 TTTCTGGCACCTC 234 | |||| ||| || Sbjct 186231 TCTCTGCCACATC 186243 >seq58056 Length=219 Score = 154 bits (170), Expect = 3e-35 Identities = 96/103 (93%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| Sbjct 219 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGA 160 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||||||||| |||||| |||| |||||| Sbjct 159 AGGACTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 117 >seq40917 Length=733 Score = 111 bits (122), Expect = 3e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| ||||||| || ||||| | || | Sbjct 1 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCTGAAGTTA 60 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||||||||| |||||| ||||||||||| Sbjct 61 AAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTCA 99 >seq106768 Length=423 Score = 100 bits (110), Expect = 5e-19 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||||||||||||||||||||||||||||||| | || ||| || Sbjct 423 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-CTAAAAACTCTT 365 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||||||||||||||| ||||| Sbjct 364 TATACTAAAGGATCGATAGGCCGTGCTTTC 335 >seq32075 Length=145 Score = 95.1 bits (104), Expect = 2e-17 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | |||| ||||||||||||||||||||||||||||||||| Sbjct 73 TACTAGGTTGAATTACTATGGCGGCG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 15 Query 61 TGACGGTCTAAACC 74 ||||||||||||| Sbjct 14 CGACGGTCTAAACC 1 >seq33548 Length=3395607 Score = 89.7 bits (98), Expect = 9e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||| |||| |||||||||||| || |||||||||||||||| ||||| Sbjct 1923043 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCGCCAC 1922984 Query 198 AAGCCAG 204 ||||||| Sbjct 1922983 AAGCCAG 1922977 >seq42595 Length=2895 Score = 87.8 bits (96), Expect = 3e-15 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 286 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 345 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | Sbjct 346 CTTGGGACCTACTTCAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 402 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||| Sbjct 403 CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTTT 457 >seq13120 Length=1394723 Score = 87.8 bits (96), Expect = 3e-15 Identities = 155/226 (69%), Gaps = 19/226 (8%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| ||| | | |||| | ||||||||||| | || Sbjct 251892 TCATCAGTAGGACAAAACTGTCCTGTATCACCATTGCCTAATCACAGCTCACGTT-CTTA 251950 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| |||||||||||||| || |||| ||| ||||||| ||| Sbjct 251951 TTAATGGGTGAACAATCCCACCCTTAGTGAAGGCTGCTTCACAGTGAAGAACCAATATTT 252010 Query 138 -TAGGAAGAGCCGACATCGAAGGATCAAA-AAGCA---ACGTCGCTATGAACGCTTGGCT 192 | |||| || | ||| ||||| |||| || || | | || ||||| |||||| Sbjct 252011 TAACGAAGTGCTAATATCTAAGGACCAAACAAACAGTGGCATTGCCATGAATACTTGGCC 252070 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||| || | ||| ||||| ||| |||||| ||||||| || Sbjct 252071 ACCACATTGCAATAATCTCTGTGATAAACTTTCTGACACCTCTTGC 252116 >seq38 Length=2139167 Score = 84.2 bits (92), Expect = 4e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCA 81 |||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1945463 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGATGGTCTAAACCCAGCTCA 1945413 >seq37373 Length=5845335 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 4363359 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 4363414 >seq33405 Length=1048 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| | |||||||||||||||||||||||||||| Sbjct 977 TACTGAGCAGTATTACTATCGCAACGACAAGCCATCAGTAGGGTAAAACTAACCTGTCTC 1036 Query 60 ATGACGGTCTAA 71 | |||||||||| Sbjct 1037 ACGACGGTCTAA 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853242185472