Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq42595 331 3e-88 seq43180 315 3e-83 seq111985 78.8 3e-12 >seq42595 Length=2895 Score = 331 bits (366), Expect = 3e-88 Identities = 421/571 (74%), Gaps = 25/571 (4%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| ||||| |||| || | ||| |||| || ||| | | | | | |||||||| Sbjct 1899 TCGACGACGGATCTTA-TCACTCGCCGTCTGACTCCCGGACG-TAAGTGCTTGGCATTCG 1956 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGG--CCCCCTAGACCATCCAGTGCTCTACCTC 118 ||||||| ||| ||||||| | |||||| |||| || | ||| ||||||||||||| Sbjct 1957 GAGTTTGACTGAACTCGGTAATCCTGTGGGGACCCCTTATTCAATC-AGTGCTCTACCTC 2015 Query 119 CGGGAAGAAACACGC----GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCA 174 | ||| ||| | || ||| |||||| |||||||||||||||||||||| Sbjct 2016 C---AAGTCTCACTCATCCGAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCAGCTATCT 2072 Query 175 CGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAG 234 | ||| ||||||| ||||||||||| ||||| |||||||| || |||| ||| | | Sbjct 2073 CCGTGTTCGATTGGCATTTCACCCCTACCCACACCTCATCCCCGCATTTTTTAACATGCG 2132 Query 235 TGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTT 294 ||||||||| |||||| | || ||||| | ||||| |||| ||||| |||||||| Sbjct 2133 TGGGTTCGGGCCTCCATTCAGTGTTACCTGAACTTCACCCTGGACATGGGTAGATCACAC 2192 Query 295 CGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 | |||||||| | | |||||| |||||||||| |||||||||||||| ||||| Sbjct 2193 GGTTTCGGGTCGACAACCCTAAACTCATTCGCCCTATTCAGACTCGCTTTCGCTGCGGCT 2252 Query 355 ACCCCAC-ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 | || | | | ||||||| || | || |||||| || |||||| ||||||| Sbjct 2253 CCGCCTCTTCAGCTTAACCTTGC-TTAGAATCGTCACTCGCCGGTCCATTCTACAAAAGG 2311 Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473 |||| |||||| || || || ||||| || ||||| ||||| |||| Sbjct 2312 TACGCTGTCACC-----CCCGAAGGG------GGCTCCAACTACTTGTAAGCACACGGTT 2360 Query 474 TCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTC 533 ||||| || ||||||||||| | ||||| ||||||||||||||||||||||||| || Sbjct 2361 TCAGGATCTCTTTCACTCCCCTTCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTT 2420 Query 534 CGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 | ||||||||||| ||||||||||| ||| Sbjct 2421 CACTATCGGTCACTGGGGAGTATTTAGCCTT 2451 >seq43180 Length=4985 Score = 315 bits (348), Expect = 3e-83 Identities = 371/497 (75%), Gaps = 20/497 (4%) Strand=Plus/Minus Query 109 GCTCTACCTCCGGGAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 |||||||||| | |||| | || | ||||||| |||||| ||||||||||||| || | Sbjct 3927 GCTCTACCTCTGT-AAGACATCATCCCACGCTGCCCCTAAAGGCATTTCGGGGAGTACGA 3869 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 ||||| | |||||||||||||||||||||||| ||||| ||||||| | |||||| Sbjct 3868 GCTATTTCCCAGTTTGATTGGCCTTTCACCCCTACCCACAAGTCATCCAAAAACTTTTCA 3809 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | |||||||||||||| ||| |||||| ||||||||||| ||||| ||| Sbjct 3808 ACGTTTACTGGTTCGGTCCTCCAGTTGGTTTTACCCAACCTTCAACCTGCTCATGGGTAG 3749 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | |||| |||| || ||| ||||||| ||| ||||||||||||| Sbjct 3748 ATCACAAGGTTTCGCGTCTACCTCCACTGACTAGCACGCCCTGTTCAGACTCGCTTTCGC 3689 Query 348 TACGGCTACCCC----ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATT 403 | ||||||| | | ||||||| || | || |||||| ||||||||| Sbjct 3688 TCCGGCTACGTACTTTAAAGCACTTAACCTTGCCAGTGAAGAGTAACTCGTAGGCTCATT 3629 Query 404 CTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAG 463 | |||||||||||||||||| | || || || |||||||| | ||||| Sbjct 3628 ATGCAAAAGGCACGCCGTCACA--GAACTTA---------TCTGCTCCGACCGCTTGTAA 3580 Query 464 GCACATGGTTTCAGGTACTATTTCACTCCCCGC--CAGGGGTACTTTTCACCTTTCCCTC 521 || ||||||||||| ||||||||| ||| ||||| |||||||||||||||| || Sbjct 3579 GCGTATGGTTTCAGGGTCTATTTCACCCCCTTATTCAGGG-TACTTTTCACCTTTCCTTC 3521 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 || ||||| || ||||||||||| | |||||||||||| |||| ||| |||| ||| || Sbjct 3520 ACAGTACTAGTTCGCTATCGGTCTCTCAGGAGTATTTAGCCTTACCGGATGGTGCCGGCA 3461 Query 582 GATTCACACGAAATTTC 598 |||||| | | ||||| Sbjct 3460 GATTCAGAGGGGATTTC 3444 >seq111985 Length=492 Score = 78.8 bits (86), Expect = 3e-12 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||| |||||||| |||| | | || | | ||||||| |||||||||||||||| Sbjct 223 GGTTTCACGTACTATTGAACTCTCTCTTCAAAGTT-CTTTTCAACTTTCCCTCACGGTAC 281 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||||||||| | | ||||||||| |||| Sbjct 282 TTGTCCGCTATCGGACTCGTGTCAGTATTTAGCCTTA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1815136933888