Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq42595 264 3e-68 seq43180 242 9e-62 >seq42595 Length=2895 Score = 264 bits (292), Expect = 3e-68 Identities = 305/396 (77%), Gaps = 16/396 (4%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||| ||| || ||||||| |||||| | ||| |||||| | ||| || |||| Sbjct 2119 TTTTTTAACATGCGTGGGTTCGGGCCTCCATTCAGT-GTTACCTGAACTT-CACCCTGGA 2176 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACT-AGACGCCCTAGTAAG 147 ||| || |||||| | |||||| |||||| | ||| ||| | ||||||| | || Sbjct 2177 CATGGG-TAGATCACACGGTTT-CGGGTCGACAACCCTAA-ACTCATTCGCCCTATTCAG 2233 Query 148 ACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATA---AGT 203 ||||||||| |||| || |||| ||| ||| | | | | |||| | | ||| | | Sbjct 2234 ACTCGCTTT-CGCTGCGGCTCCGCCTCTTCAGCTTAACCTTGC---TTAGAATCGTCACT 2289 Query 204 CGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGT 263 ||| | ||||| |||||||||||||| ||||||| | ||| ||||||| ||| ||||| Sbjct 2290 CGCCGGTCCATTCTACAAAAGGTACGCTGTCACCCC-CGAAGGGGGCTCCAACTACTTGT 2348 Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 | ||| ||||||||||||||| |||||||||||| |||||||| |||||| ||||||||| Sbjct 2349 AAGCACACGGTTTCAGGATCTCTTTCACTCCCCT-TCCGGGGTGCTTTTCACCTTTCCCT 2407 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383 ||||||||| ||||||||||||||| | | ||||||||||||||| || ||||| ||| Sbjct 2408 CACGGTACTGGTTCACTATCGGTCACTGGGGAGTATTTAGCCTTGGGAGACGGTCCTCCC 2467 Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| ||| |||||||||| ||| | ||||| Sbjct 2468 GGATTCCGACGGGGTTTCTCGTGTCCCGCCGTACTC 2503 >seq43180 Length=4985 Score = 242 bits (268), Expect = 9e-62 Identities = 298/391 (76%), Gaps = 17/391 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| || ||||||| ||||| | ||||||||||||||||| || || Sbjct 3833 CCACAAGTCAT-CCAAAAACTTTT-CAACGTTTACTGGTTCGGTCCTCCAGTTGGTT-TT 3777 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||| ||| || |||||| | ||||| || ||||| ||| | Sbjct 3776 ACCCAACCTT-CAACCTGCTCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCC-ACT 3721 Query 129 GACTAG-ACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-----CGGTTAA 182 |||||| ||||||| | ||||||||||| |||| || || | || | |||| Sbjct 3720 GACTAGCACGCCCTGTTCAGACTCGCTTT-CGCTCCGGCTACGTACTTTAAAGCACTTAA 3662 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 ||| |||| |||| | ||| ||| | | |||||| ||||||| |||| ||||| ||| Sbjct 3661 CCTT-GCCAGTGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACAGAAC 3603 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | | ||||| || ||||||| || || ||||||||| |||||||||| ||| | | | Sbjct 3602 TTA-TCTGCTCCGACCGCTTGTAAGCGTATGGTTTCAGGGTCTATTTCACCCCCTTATTC 3544 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||| |||||| ||||||| |||| |||||||||| ||||||||| |||| ||||||| Sbjct 3543 AGGGTACTTTTCACCTTTCCTTCACAGTACTAGTTCGCTATCGGTCTCTCAGGAGTATTT 3484 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGA 392 |||||| ||||||| || || ||||||| Sbjct 3483 AGCCTTACCGGATGGTGCCGGCAGATTCAGA 3453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239917483008