Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq16615 93.3 5e-17 seq39182 86.0 7e-15 seq35752 80.6 3e-13 seq17706 78.8 1e-12 >seq16615 Length=598 Score = 93.3 bits (102), Expect = 5e-17 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11 AACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT 70 |||||||||||||| || | ||||||||| |||||||| ||| | |||||| |||| Sbjct 1 AACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATTCAGGCGA 59 Query 71 AAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 60 CCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 97 >seq39182 Length=5500 Score = 86.0 bits (94), Expect = 7e-15 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| || | |||||| | |||| |||||||||||||| | ||||| Sbjct 5471 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAAGCGTAG 5413 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||||||||||| ||||||||||| |||| |||| || Sbjct 5412 GCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 5376 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 240 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 182 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 181 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 144 >seq35752 Length=288 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GC 68 || |||||| |||| | || | |||| | | |||| |||||||||||||||| | || Sbjct 45 AAGCCAACACAATAAGACCGGAA-TCCTGTGATGTTATCCCATGCTAATGTATTCAGAGC 103 Query 69 GTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||| ||||||||||| ||||||||||| |||| |||| || Sbjct 104 GTAGGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 144 >seq17706 Length=950375 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || ||||||||| |||||||| ||| |||| | |||| Sbjct 375595 AAACCAACAAAATAGAACCGTG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 375537 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 375536 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 375496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594418637808