Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq42595 221 3e-55
seq43180 156 1e-35
>seq42595
Length=2895
Score = 221 bits (244), Expect = 3e-55
Identities = 298/405 (74%), Gaps = 10/405 (2%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|| |||||||| ||||||||| |||||| ||||||| |||| | || ||| ||| | |
Sbjct 1502 CGCCTACGCCTTTCGGCCTCGGCTTAGGCCCCGACTAACCCTGAGCGGACGAACCTTCCT 1561
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| ||||||||| | ||| |||| ||||| ||| || || ||||||| ||
Sbjct 1562 CAGGAACCCTTAGGCTTTCGACGGAGAAGATTCTCACTTCTCTTTTCGTTACTCATACCG 1621
Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACAC 177
||||||||||| || ||||| || | |||| || ||||| | || |
Sbjct 1622 GCATTCTCACTTCCAAACGCTCCAACATGCC-TCACGGCACATCTTCAATGCCCTTGGA- 1679
Query 178 GACGCTCCCCTACCCA-ACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236
||||||||||||| ||| || | || | |||||| | |||| ||||||
Sbjct 1680 -ACGCTCCCCTACCATGACCTGACGGTCATCCGCGACTTCGGTGCTGTGCTTA-GCCCCG 1737
Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296
|||||| |||||||| |||| |||||||||||||||||||||||||| || | |||
Sbjct 1738 TTACATTTTCGGCGCGACGCCACTCGACCAGTGAGCTATTACGCACTCTTTAAATGGTGG 1797
Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356
||||||| ||||||| |||||||||||| ||||| |||||||||||||||| || ||
Sbjct 1798 CTGCTTCTGAGCCAACATCCTGGTTGTCTGGGCAACGTCACATCCTTTCCCACTTAG-CA 1856
Query 357 C-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| |||||||| |||||| | | |||||||||||||||| |||
Sbjct 1857 CAAACTTAGGGACCTTAGTCGGCGGTCTGGGCTGTTTCCCTTTCG 1901
>seq43180
Length=4985
Score = 156 bits (172), Expect = 1e-35
Identities = 285/410 (70%), Gaps = 12/410 (3%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||| |||||||||| ||||||| |||| || || | | | |
Sbjct 4439 CGACTACGCCTTTCGGCTTCGCCTTAGGTCCCGACTAACCCGCAGCTGATTAGCATTGCT 4380
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
|||| |||| | |||| | |||| ||| | |||| | || |||| ||||||
Sbjct 4379 GCGGAAACCTTAGTCTTTCGGTGTGCGGGTTTCTCGCCCGCATTATCGTTACTTATGCCT 4320
Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179
|||| | | | | |||||||| || ||||| |||||| | ||||| ||
Sbjct 4319 ACATTTGCTTTTCTAGCCGCTCCACCATGCA-TCACCACATAGCTTCTGCGCTGACTAGA 4261
Query 180 C-GCTCCCCTACCCAACCACACAGGTTG-----CCACAGCTTCGGCGGATAACTTAAGCC 233
||||||||||| ||| | | ||| |||||||| |||| | |
Sbjct 4260 ATGCTCCCCTACCAGTGTACATTGCTGTACAATCCAAAGCTTCGGTACTACACTTGATGC 4201
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||||||| || || || |||||||||||| ||||||||||||| || ||
Sbjct 4200 CCGATT-ATTATCGATGCCCTGTCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGA 4142
Query 294 -TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACT 350
||||||||||||||||||| |||||| ||||| |||||| || |||| | | |||
Sbjct 4141 ATGGCTGCTTCCAAGCCAACATCCTGGCTGTCTCGGCAACTGGACCACCTTAGTTCAACT 4082
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| | || ||| ||||||||| || |||||| | |||||||||||
Sbjct 4081 TAGTGTAGATTTTGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCCTCTCG 4032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176004210688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |