Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq42595 221 3e-55 seq43180 156 1e-35 >seq42595 Length=2895 Score = 221 bits (244), Expect = 3e-55 Identities = 298/405 (74%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||| ||||||||| |||||| ||||||| |||| | || ||| ||| | | Sbjct 1502 CGCCTACGCCTTTCGGCCTCGGCTTAGGCCCCGACTAACCCTGAGCGGACGAACCTTCCT 1561 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||| | ||| |||| ||||| ||| || || ||||||| || Sbjct 1562 CAGGAACCCTTAGGCTTTCGACGGAGAAGATTCTCACTTCTCTTTTCGTTACTCATACCG 1621 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACAC 177 ||||||||||| || ||||| || | |||| || ||||| | || | Sbjct 1622 GCATTCTCACTTCCAAACGCTCCAACATGCC-TCACGGCACATCTTCAATGCCCTTGGA- 1679 Query 178 GACGCTCCCCTACCCA-ACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||||||||| ||| || | || | |||||| | |||| |||||| Sbjct 1680 -ACGCTCCCCTACCATGACCTGACGGTCATCCGCGACTTCGGTGCTGTGCTTA-GCCCCG 1737 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 |||||| |||||||| |||| |||||||||||||||||||||||||| || | ||| Sbjct 1738 TTACATTTTCGGCGCGACGCCACTCGACCAGTGAGCTATTACGCACTCTTTAAATGGTGG 1797 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||| |||||||||||| ||||| |||||||||||||||| || || Sbjct 1798 CTGCTTCTGAGCCAACATCCTGGTTGTCTGGGCAACGTCACATCCTTTCCCACTTAG-CA 1856 Query 357 C-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||||||| |||||| | | |||||||||||||||| ||| Sbjct 1857 CAAACTTAGGGACCTTAGTCGGCGGTCTGGGCTGTTTCCCTTTCG 1901 >seq43180 Length=4985 Score = 156 bits (172), Expect = 1e-35 Identities = 285/410 (70%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||| |||||||||| ||||||| |||| || || | | | | Sbjct 4439 CGACTACGCCTTTCGGCTTCGCCTTAGGTCCCGACTAACCCGCAGCTGATTAGCATTGCT 4380 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | |||| | |||| ||| | |||| | || |||| |||||| Sbjct 4379 GCGGAAACCTTAGTCTTTCGGTGTGCGGGTTTCTCGCCCGCATTATCGTTACTTATGCCT 4320 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 |||| | | | | |||||||| || ||||| |||||| | ||||| || Sbjct 4319 ACATTTGCTTTTCTAGCCGCTCCACCATGCA-TCACCACATAGCTTCTGCGCTGACTAGA 4261 Query 180 C-GCTCCCCTACCCAACCACACAGGTTG-----CCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||| ||| | | ||| |||||||| |||| | | Sbjct 4260 ATGCTCCCCTACCAGTGTACATTGCTGTACAATCCAAAGCTTCGGTACTACACTTGATGC 4201 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||||||| || || || |||||||||||| ||||||||||||| || || Sbjct 4200 CCGATT-ATTATCGATGCCCTGTCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGA 4142 Query 294 -TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACT 350 ||||||||||||||||||| |||||| ||||| |||||| || |||| | | ||| Sbjct 4141 ATGGCTGCTTCCAAGCCAACATCCTGGCTGTCTCGGCAACTGGACCACCTTAGTTCAACT 4082 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| | || ||| ||||||||| || |||||| | ||||||||||| Sbjct 4081 TAGTGTAGATTTTGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCCTCTCG 4032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176004210688