Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq39182 131 2e-28
seq119339 102 8e-20
seq16615 102 8e-20
seq35752 98.7 1e-18
seq56553 87.8 2e-15
seq17706 82.4 8e-14
>seq39182
Length=5500
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 203
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 204 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 261
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 262 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 321
Query 190 T 190
|
Sbjct 322 T 322
Score = 82.4 bits (90), Expect = 8e-14
Identities = 77/97 (79%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATG 70
|| |||||||||| ||||||||| | ||||||||||||| ||| | |||||||| ||||
Sbjct 5376 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTTGTATACATTAGCATG 5435
Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG 107
| |||| | |||||| | || | ||||| ||| ||
Sbjct 5436 GGATAACATCATAGGA-TTTCGATCCTATTGTGTTGG 5471
>seq119339
Length=645
Score = 102 bits (112), Expect = 8e-20
Identities = 136/185 (74%), Gaps = 13/185 (7%)
Strand=Plus/Plus
Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65
|||||||||||| ||||||||| | ||||||| ||| |||| |||| |||
Sbjct 233 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTAAAAATGCTGCTTGAAT--ATTT 290
Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121
| ||||||||||||||||| || | |||||||||||||| ||||| || || |
Sbjct 291 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 349
Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181
|||||||| |||| ||||| ||||| | ||||| || | ||||||||||||
Sbjct 350 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 409
Query 182 TGGAT 186
|||||
Sbjct 410 TGGAT 414
>seq16615
Length=598
Score = 102 bits (112), Expect = 8e-20
Identities = 83/98 (85%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| |||||||||||||| | || |||||| | | | ||
Sbjct 97 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 38
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT 109
|||||| ||||||||| | |||||||||||||| ||||
Sbjct 37 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTT 1
>seq35752
Length=288
Score = 98.7 bits (108), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | ||||||||||||| |||| |||||||||| |||
Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTCTGAATACATTAGCAT 85
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | |||| |||| ||| || || ||| || |||||||
Sbjct 84 GGGATAACATCACAGGA-TTCCGGTCTTATTGTGTTGGCTTTCGGGATCG-GAGTAATGA 27
Query 130 TAAATACGGATAGTCGGGGG 149
| || | ||| |||||||||
Sbjct 26 TTAACAGGGACAGTCGGGGG 7
>seq56553
Length=217
Score = 87.8 bits (96), Expect = 2e-15
Identities = 92/120 (77%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126
||||||||||| ||||||||| | |||||||||||||| ||||| | || ||||
Sbjct 3 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACTTGAGGTAA 61
Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
|||| || | ||| || |||||| | ||||| ||| | |||||||||||||||||
Sbjct 62 TGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGAT 121
>seq17706
Length=950375
Score = 82.4 bits (90), Expect = 8e-14
Identities = 80/101 (79%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69
||||||||||||||||||||| |||||||||||||| || | |||| | |
Sbjct 375496 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 375555
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||||| ||||||||| |||||||||||||| |||||
Sbjct 375556 GGAATAATGGAATAGGAC-CACGGTTCTATTTTGTTGGTTT 375595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511327860480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |