Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq39182 131 2e-28 seq119339 102 8e-20 seq16615 102 8e-20 seq35752 98.7 1e-18 seq56553 87.8 2e-15 seq17706 82.4 8e-14 >seq39182 Length=5500 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 203 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 204 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 261 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 262 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 321 Query 190 T 190 | Sbjct 322 T 322 Score = 82.4 bits (90), Expect = 8e-14 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATG 70 || |||||||||| ||||||||| | ||||||||||||| ||| | |||||||| |||| Sbjct 5376 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTTGTATACATTAGCATG 5435 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG 107 | |||| | |||||| | || | ||||| ||| || Sbjct 5436 GGATAACATCATAGGA-TTTCGATCCTATTGTGTTGG 5471 >seq119339 Length=645 Score = 102 bits (112), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 13/185 (7%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| |||| |||| ||| Sbjct 233 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTAAAAATGCTGCTTGAAT--ATTT 290 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 291 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 349 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||||| ||||| | ||||| || | |||||||||||| Sbjct 350 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 409 Query 182 TGGAT 186 ||||| Sbjct 410 TGGAT 414 >seq16615 Length=598 Score = 102 bits (112), Expect = 8e-20 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | || Sbjct 97 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTTCAGCTAGG 38 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT 109 |||||| ||||||||| | |||||||||||||| |||| Sbjct 37 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTT 1 >seq35752 Length=288 Score = 98.7 bits (108), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | ||||||||||||| |||| |||||||||| ||| Sbjct 144 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTACGCTCTGAATACATTAGCAT 85 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| |||| ||| || || ||| || ||||||| Sbjct 84 GGGATAACATCACAGGA-TTCCGGTCTTATTGTGTTGGCTTTCGGGATCG-GAGTAATGA 27 Query 130 TAAATACGGATAGTCGGGGG 149 | || | ||| ||||||||| Sbjct 26 TTAACAGGGACAGTCGGGGG 7 >seq56553 Length=217 Score = 87.8 bits (96), Expect = 2e-15 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | |||||||||||||| ||||| | || |||| Sbjct 3 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACTTGAGGTAA 61 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| || | ||| || |||||| | ||||| ||| | ||||||||||||||||| Sbjct 62 TGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGAT 121 >seq17706 Length=950375 Score = 82.4 bits (90), Expect = 8e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 375496 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 375555 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| |||||||||||||| ||||| Sbjct 375556 GGAATAATGGAATAGGAC-CACGGTTCTATTTTGTTGGTTT 375595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511327860480