Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq42595 102 8e-20 seq42138 100 3e-19 >seq42595 Length=2895 Score = 102 bits (112), Expect = 8e-20 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | | |||||||||||||| | || |||||| |||| Sbjct 462 GTTGAGCGATGGCCCTTCCATGCGGTGCCACCGGATCACTAAGCCCGACTTTCGTCCCTG 521 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| ||| |||| || |||| | | ||| || Sbjct 522 CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTGTGCCTTTACACTCTGCGAATGATTTC 581 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 582 CAACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 617 >seq42138 Length=1005 Score = 100 bits (110), Expect = 3e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||||| || |||||| ||||| Sbjct 521 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 580 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || |||| ||||||||| ||||||| ||||| || Sbjct 581 TCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCTATTGCGCT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472978270944