Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq42595 379 3e-103 seq42138 297 3e-78 >seq42595 Length=2895 Score = 379 bits (420), Expect = 3e-103 Identities = 247/270 (91%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TAT 65 ||||||| |||||||||| |||||| |||||||| |||| || ||||| |||||| ||| Sbjct 119 GGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCGTAT 178 Query 66 GCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAG 125 || | |||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||| Sbjct 179 GCTCCTGGCGGAACAACTGGTACACCAGCGGTGTGTCCATCCCGGTCCTCTCGTACTAAG 238 Query 126 GACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 239 GACAGCTCTTCTCAAATTTCCTACGCCCGCGACGGATAGGGACCGAACTGTCTCACGACG 298 Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 299 TTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 358 Query 246 TCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||| || |||||||||||| Sbjct 359 TCAGCCCCAGGATGCGATGAGCCGACATCG 388 >seq42138 Length=1005 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | ||| Sbjct 64 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 123 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||| ||||||||| | |||||||||||||| || |||||||||||||| Sbjct 124 CGGTGCACCTGGCGGTACAACTGATACACCAGAGGTTTGTTCAATTCGGTCCTCTCGTAC 183 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || ||||||||| || |||||| | | ||||| |||||||||||||| | Sbjct 184 TAGAATCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 243 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 244 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 303 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 304 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 337 Score = 159 bits (176), Expect = 5e-37 Identities = 96/101 (95%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 175 GTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCT 234 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 346 GTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCT 405 Query 235 TGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| || ||||||||||||| ||||||||||||||| Sbjct 406 TGGGACCTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779774987232