Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq43180 212 2e-52 seq97921 154 4e-35 >seq43180 Length=4985 Score = 212 bits (234), Expect = 2e-52 Identities = 299/414 (72%), Gaps = 12/414 (3%) Strand=Plus/Minus Query 5 TTTACAACCCG-AAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | || |||||| || | ||||||||||||||| |||| | | |||| Sbjct 1215 TTTACAACGCATAACGCCTTCATCCTGCACGCGGCATGGCTGGTTCAGAGTCTCCTCCAT 1156 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1155 TGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTGTCTCAGTGCCAGTG 1096 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||||||||||||||| |||| |||||||||| ||| |||| |||||| || Sbjct 1095 TGGGGGATCATCCTCTCAGACCCCCTAGCCATCGTCGCCTTGGTAGGCCGTTACCCTACC 1036 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTC--TT 241 ||||||||||| || | ||||| || | | | | | | |||| | Sbjct 1035 AACTAGCTAATGGCACGCATGCCCATCCTCTACCAATAAATCTTTAATTGCTCCTCCATG 976 Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 | ||| | | ||| ||||||| | |||||| || |||||||| | | Sbjct 975 CGAAGGTGCAATGCCATGGGGTATTAATCCGGGTTTCCCCGGGCTATCCCCCGGTAAAGG 916 Query 302 G-CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360 | |||| | | | |||| ||||||| |||||||| |||| | | | ||| | | Sbjct 915 GTAAGTTGCATACGCGTTACGCACCCGTGCGCCACTC-TCAG-TACCCCGAAAGGTAC-- 860 Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 859 ----CTACCGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCTGAG 810 >seq97921 Length=347 Score = 154 bits (170), Expect = 4e-35 Identities = 111/128 (87%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 346 CAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGG 287 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 | ||| |||||||| || ||| ||||||||||| |||| ||| ||||| | |||||| Sbjct 286 GGATCACCCTCTCAGGCCCCCTAAAGATCGTCGCCTTGGTGAGCCGTTACCTCACCAACT 227 Query 188 AGCTAATC 195 |||||||| Sbjct 226 AGCTAATC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220743501312