Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq43180 266 1e-68 seq97921 197 4e-48 >seq43180 Length=4985 Score = 266 bits (294), Expect = 1e-68 Identities = 283/375 (75%), Gaps = 20/375 (5%) Strand=Plus/Plus Query 145 GGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGA 204 |||| ||||| | | |||| ||||||||||||||| ||||||||| ||||||||||| Sbjct 1002 GGTAGAGGATGGGCATGCGTGCCATTAGCTAGTTGGTAGGGTAACGGCCTACCAAGGCGA 1061 Query 205 CGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAAC 264 |||| ||| | |||||||| ||||| ||||| ||| |||||||||||| ||| || Sbjct 1062 CGATGGCTAGGGGGTCTGAGAGGATGATCCCCCACACTGGCACTGAGACACGGGCCAGAC 1121 Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACG 324 ||||||||||||||||||| |||||||||| |||||| | | |||| |||| | | Sbjct 1122 TCCTACGGGAGGCAGCAGTAGGGAATATTGGTCAATGGAGGAGACTCTGAACCAGCCATG 1181 Query 325 CCGCGTGAGCGATGAAGGCCTT-CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA---- 379 ||||||| ||||||||| || | || ||||| || | | ||||||| || Sbjct 1182 CCGCGTGCAGGATGAAGGCGTTATGCGTTGTAAACTGCTTTTATATAGGAAGAAAAAGGG 1241 Query 380 --------------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGC 425 |||||||||| | || |||| |||||||||| |||||||||||| Sbjct 1242 AGTGCGCTCCTATCTGACGGTACTATATGAATAAGCACCGGCTAACTCCGTGCCAGCAGC 1301 Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 |||||||||||| |||| || |||||| |||||| ||| | ||| |||||||||||||| Sbjct 1302 CGCGGTAATACGGAGGGTGCAAGCGTTGTCCGGATTTA-TTGGGTTTAAAGGGTGCGTAG 1360 Query 486 GTGGTTTCTTAAGTC 500 | || | ||||||| Sbjct 1361 GCGGATAATTAAGTC 1375 >seq97921 Length=347 Score = 197 bits (218), Expect = 4e-48 Identities = 209/274 (76%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||||||||| ||||||| | ||| |||| | |||||||| | || ||||| | | Sbjct 74 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCAAGGGGATAGCCTTT 133 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 ||||||| | |||||| |||||||| || | |||| || | ||| || Sbjct 134 CGAAAGGAAGATTAATACCCTATAATATA-TTGACTGGCATCAGTTAATATTGAAAACTA 192 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 ||| || | ||| | | |||| ||||||||||||||| ||||||||||| |||||| Sbjct 193 CGGTGGATAAAGATGGGCACGCGCAAGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAG 252 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 ||||||||| ||| | ||||||||||||||| ||||| ||| |||||||||||| || Sbjct 253 GCGACGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGACC 312 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 | |||||||||||||||||||||| ||||||||| Sbjct 313 AGACTCCTACGGGAGGCAGCAGTGAGGAATATTG 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495570572288