Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq96747 224 2e-56 seq36885 217 3e-54 seq103156 215 1e-53 seq38450 192 1e-46 seq38417 147 4e-33 seq57302 123 5e-26 seq44111 86.0 1e-14 seq64219 82.4 1e-13 >seq96747 Length=339 Score = 224 bits (248), Expect = 2e-56 Identities = 240/310 (77%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCCGCTTTG-GCGGGTCGCCGGCTTC 75 || |||||| || |||||||||||| | | ||||| || | ||| | |||| Sbjct 306 GAACGAGACTCTAGCCTGCTAAATAGTTCACCGATCCGCTCTGCGTCGGTG--CAACTTC 249 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| | ||| | |||| || | ||||| |||||||||||||||||||| Sbjct 248 TTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGATGC 191 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||| ||||||||||||||||||||||| || ||||| | || | |||| Sbjct 190 CCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTCTTATCCTT 131 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | |||||||| ||||||| | | || ||| ||||||| ||||| | | ||| ||| Sbjct 130 GCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGTAAT 71 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||||||| Sbjct 70 TCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGT 11 Query 315 CCCTGCCCTT 324 |||||||||| Sbjct 10 CCCTGCCCTT 1 >seq36885 Length=681 Score = 217 bits (240), Expect = 3e-54 Identities = 179/216 (83%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||| || || ||| ||||||| |||||||||||||||||||||| Sbjct 218 CTTCTTAGAGGGACTATGCGCGTCTAGCGTATGGAAGATTGAGGCAATAACAGGTCTGTG 159 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||||||||||||||||||||||||||||||||||| | ||||||||| | Sbjct 158 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATTCAACGAGTTTCACT 99 Query 188 TCA----CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | | ||| || ||||||| |||||||||| | ||| | ||||||||||||||| Sbjct 98 TGATAGTCCTGGGTCGGAAGGCTCGGGTAATCTTTTGAAAGTGCATCGTGCTGGGGATAG 39 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCT 279 | |||||||||| ||| |||| |||||||||| ||| Sbjct 38 ATCATTGCAATTTTTGATCTTAAACGAGGAATTCCT 3 Score = 149 bits (164), Expect = 1e-33 Identities = 102/114 (89%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||| || || ||| ||||||| |||||||||||||||||||||| Sbjct 555 CTTCTTAGAGGGACTATGCGCGTCTAGCGTATGGAAGATTGAGGCAATAACAGGTCTGTG 496 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 495 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATTCAACGAGT 442 >seq103156 Length=387 Score = 215 bits (238), Expect = 1e-53 Identities = 203/254 (80%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 249 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 192 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 191 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 135 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 134 CCCTGGCCTAGAGGCCCGGGCAACCCGCTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 75 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 74 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 15 Query 311 ACGTCCCTGCCCTT 324 |||||||||||||| Sbjct 14 ACGTCCCTGCCCTT 1 >seq38450 Length=350 Score = 192 bits (212), Expect = 1e-46 Identities = 201/260 (77%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||| | |||| || ||||| || | ||||| |||||||||||||| Sbjct 255 CTTCTTAGAGGGATAAGCGGCAATTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTG 198 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| | ||||| || | Sbjct 197 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGGATCAACGTGTCCTC 138 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||| ||| ||| |||||| | | ||| || || || | ||||| | | | Sbjct 137 CCCCT---CCGAGAGGAGCGGGTAACCCGTTGAAATCCTTTCATGATAGGGATTGGGGTT 81 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | | | | |||||||||| || ||||||||| ||||| ||| ||||||| Sbjct 80 TGCAATTGTCTCCCATGAACGAGGAATTCCCAGTAAGCGCAAGTCATGAGCTTGCGTTGA 21 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 20 TTACGTCCCTGCCCTTTGTA 1 >seq38417 Length=698 Score = 147 bits (162), Expect = 4e-33 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| | Sbjct 508 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACG 567 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | |||| |||| |||| |||||| | | || | | ||||| Sbjct 568 GATCAGCGTGTGTCTACCCTTCGCCGACAGGTGCGGGTAACCCGCTGAACCCCGTTCGTG 627 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | ||||| | | |||||||||||| | | | |||||||||| || |||||| ||| ||| Sbjct 628 ATAGGGATCGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTC 687 Query 294 ATCAGCACGCG 304 || ||| |||| Sbjct 688 ATAAGCTCGCG 698 Score = 93.3 bits (102), Expect = 8e-17 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGG-CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || || |||| || | | ||| |||||||||||||||| Sbjct 90 CTTCTTAGAGGGACAAGTGGACTTCAGCCACACGA-GATCGAG-CAATAACAGGTCTGTG 147 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||| | |||| |||||||||||||||||| Sbjct 148 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA 187 >seq57302 Length=218 Score = 123 bits (136), Expect = 5e-26 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 3 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 62 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 63 TGACTACGTCCCTGCCCTTTGTA 85 >seq44111 Length=786367 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 563203 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 563146 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||| | | |||| ||||| | ||||||||||| Sbjct 563145 ATGCCCTTAGATATCCAGGGCTGCACGTGTGCTACACTGAC 563105 >seq64219 Length=230 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 7 AACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTT 66 Query 326 GTA 328 ||| Sbjct 67 GTA 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945916430336